miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 79.8 bits (40), Expect = 1e-14
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatttccactacggactacatatga 66
|||||||||||||||||||| ||||||| | ||||||||| ||||| |||||||||| ||
Sbjct: 161 tactccctccgttcctaaatataagtctctgtagagattt-cactatggactacatacga 103
Query: 67 cgtaaaatgagtgagtcgacactc 90
| ||||||||||| || ||||||
Sbjct: 102 agcaaaatgagtgaatctacactc 79
Score = 65.9 bits (33), Expect = 1e-10
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatttccactacggactacata 63
|||||||||||||||||||| ||||||||| |||||| |||||||| |||| |||||
Sbjct: 5 tactccctccgttcctaaatataagtctttgtagaga-ttccactatggaccacata 60
>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
Length = 107
Score = 77.8 bits (39), Expect = 4e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 6 atactccctccgttcctaaatgtaagtctttctagagatttccactacggactacatatg 65
||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||| |
Sbjct: 4 atactccctcctttcctaaatataagtctttctaaagattt-cactacggactacatacg 62
Query: 66 acgtaaaatga 76
| || ||||||
Sbjct: 63 aagtgaaatga 73
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 116 aaagacttgcatttaggaaaggagggagtatt 147
|||||||| ||||||||||||||||||||||
Sbjct: 34 aaagacttatatttaggaaaggagggagtatt 3
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 6 atactccctccgttcctaaatgtaagtctttctagagatttc 47
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 atactccctccgttcctaaatgtaagtctttttagagatttc 43
Score = 56.0 bits (28), Expect = 1e-07
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 104 gaaatctctaaaaaagacttgcatttaggaaaggagggagtatt 147
|||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct: 43 gaaatctctaaaaa-gacttacatttaggaacggagggagtatt 1
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 7 tactccctccgttcctaaatgtaagtctttctaga 41
|||||||||||||||||||| ||||||||| ||||
Sbjct: 165 tactccctccgttcctaaatataagtctttttaga 131
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 119
Score = 69.9 bits (35), Expect = 9e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 6 atactccctccgttcctaaatgtaagtctttctagagatttccactacggactacatatg 65
||||||||||||||||||||| ||||||||| |||||| || ||||| |||||||||| |
Sbjct: 4 atactccctccgttcctaaatataagtctttttagaga-ttacactatggactacatacg 62
Query: 66 acgtaaaatgagtga 80
| |||||||||||
Sbjct: 63 gagcaaaatgagtga 77
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 ccctccgttcctaaatgtaagtctttctagagatt 45
|||||||||||||||| |||||| || ||||||||
Sbjct: 111 ccctccgttcctaaatataagtccttttagagatt 77
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatttc 47
|||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtctttgtagagatttc 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtcttt 36
|||||||||||||||||||| |||||||||
Sbjct: 1 tactccctccgttcctaaatataagtcttt 30
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatttc 47
|||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtctttttagagatttc 124
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatttc 47
|||||||||||||||||||| ||||||||| ||||| ||||
Sbjct: 1 tactccctccgttcctaaatataagtctttttagaggtttc 41
Score = 44.1 bits (22), Expect = 5e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 104 gaaatctctaaaaaagacttgcatttaggaaaggagggagta 145
||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 124 gaaatctct-aaaaagacttatatttaggaacggagggagta 164
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 6 atactccctccgttcctaaatgtaagtctttctagagattt 46
||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 167 atactccctccgttcctaaatataagtctttttagagattt 127
Score = 56.0 bits (28), Expect = 1e-07
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatttccactacggactacatatga 66
||||||||| |||||||||| ||||||||| |||||||| | | || |||||||||| |
Sbjct: 5 tactccctctgttcctaaatataagtctttttagagatt-ctaatatggactacatacgg 63
Query: 67 cgtaaaatgagtgagtcgacactc 90
| ||||||||||| || ||||||
Sbjct: 64 agcaaaatgagtgaatctacactc 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 92 gtagtccgcattgaaatctctaaaaaagacttgcatttaggaaaggagggagtat 146
||||||| ||| ||||||||||||| ||||| ||||||||| |||||||||||
Sbjct: 114 gtagtccatattcaaatctctaaaaa-gacttatatttaggaacggagggagtat 167
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatttc 47
|||||||||||||||||||| ||||||||| |||||||||
Sbjct: 5 tactccctccgttcctaaatataagtctttggagagatttc 45
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgttcctaaatgtaagtctt 35
|||||||||||||||||||| ||||||||
Sbjct: 165 tactccctccgttcctaaatataagtctt 137
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 6 atactccctccgttcctaaatgtaagtctttc 37
||||||||||||||||||||| ||||||||||
Sbjct: 139 atactccctccgttcctaaatataagtctttc 108
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum
(bread wheat)
Length = 167
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 atactccctccgttcctaaatgtaagtcttt 36
||||||||||||||||||||| |||||||||
Sbjct: 1 atactccctccgttcctaaatataagtcttt 31
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 atactccctccgttcctaaatgtaagtcttt 36
||||||||||||||||||||| |||||||||
Sbjct: 4 atactccctccgttcctaaatataagtcttt 34
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 atactccctccgttcctaaatgtaagtcttt 36
||||||||||||||||||||| |||||||||
Sbjct: 152 atactccctccgttcctaaatataagtcttt 122
>RF01058;MIR806;AAAA02033301.1/5869-5628 39946:Oryza sativa Indica
Group
Length = 242
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 atactccctccgttcctaaatgt 28
|||||||||||||||||||||||
Sbjct: 242 atactccctccgttcctaaatgt 220
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatt 45
|||||||||||||||||||| |||| | || ||||||||
Sbjct: 1 tactccctccgttcctaaatataagaccttttagagatt 39
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 166
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagatt 45
|||||||||||||||||||| |||| | || ||||||||
Sbjct: 4 tactccctccgttcctaaatataagaccttttagagatt 42
>RF01058;MIR806;AAAA02015256.1/6210-6451 39946:Oryza sativa Indica
Group
Length = 242
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgttcctaaatgt 28
||||||||||||||||||||||
Sbjct: 241 tactccctccgttcctaaatgt 220
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtctttctag 40
||||||||||||||| || |||||||| ||||||
Sbjct: 5 tactccctccgttccaaattgtaagtcgttctag 38
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 atactccctccgttcctaaatgtaag 31
||||||||||||||||||||| ||||
Sbjct: 167 atactccctccgttcctaaatataag 142
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 7 tactccctccgttcctaaatgtaagtctttctagagat 44
|||||||||||||||||||| |||| | || |||||||
Sbjct: 2 tactccctccgttcctaaatataagaccttttagagat 39
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 atactccctccgttcctaaatgtaag 31
||||||||||||||||||||| ||||
Sbjct: 4 atactccctccgttcctaaatataag 29
>RF00906;MIR1122;AACV01022002.1/8629-8715 39947:Oryza sativa
Japonica Group
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 tactccctccgttcctaaatgtaagtctttctag 40
||||||||||||| | |||||||||||||||||
Sbjct: 83 tactccctccgtttcataatgtaagtctttctag 50
>RF00906;MIR1122;AP005467.3/75230-75071 39947:Oryza sativa Japonica
Group
Length = 160
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 tactccctccgttcctaaatgtaagtctttctag 40
||||||||||||||| |||||||||| ||||||
Sbjct: 156 tactccctccgttccacaatgtaagtcattctag 123
