miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
(castor bean)
Length = 127
Score = 67.9 bits (34), Expect = 8e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 39 tgtttggtagccaaggatgacttgcccgctccat 72
||||||||||||||||||||||||||||||||||
Sbjct: 115 tgtttggtagccaaggatgacttgcccgctccat 82
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 253 cgggcagtctccttggctatgctgac 278
||||||||||||||||||||||||||
Sbjct: 39 cgggcagtctccttggctatgctgac 14
>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
trichocarpa
Length = 133
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 38 gtgtttggtagccaaggatgacttgcccgctccatt 73
|||||||||||||||||||||||||||| |||||||
Sbjct: 122 gtgtttggtagccaaggatgacttgcccactccatt 87
>RF00645;MIR169_2;AARH01003823.1/108339-108220 3694:Populus
trichocarpa
Length = 120
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 38 gtgtttggtagccaaggatgacttgcccgctccatt 73
|||||||||||||||||||||||||||| |||||||
Sbjct: 5 gtgtttggtagccaaggatgacttgcccactccatt 40
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 61.9 bits (31), Expect = 5e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 39 tgtttggtagccaaggatgacttgcccgctccatt 73
|||||||||||||||||||||||||| ||||||||
Sbjct: 131 tgtttggtagccaaggatgacttgcctgctccatt 97
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 61.9 bits (31), Expect = 5e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgcccgctccatt 73
|||||||||||||||||||||||||| ||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcctgctccatt 40
>RF00645;MIR169_2;AASG02003632.1/1429-1542 3988:Ricinus communis
(castor bean)
Length = 114
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgcccgctccat 72
||||||||||||||| ||||||||||||||||||
Sbjct: 6 tgtttggtagccaagaatgacttgcccgctccat 39
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 253 cgggcagtctccttggctatgctgac 278
||||||||||||||||||||||||||
Sbjct: 82 cgggcagtctccttggctatgctgac 107
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 39 tgtttggtagccaaggatgacttgcccgctcc 70
|||||||||||||||||||||||||| |||||
Sbjct: 127 tgtttggtagccaaggatgacttgcctgctcc 96
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 38 gtgtttggtagccaaggatgacttgccc 65
||||||||||||||||||||||||||||
Sbjct: 121 gtgtttggtagccaaggatgacttgccc 94
>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
trichocarpa
Length = 119
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 gtgtttggtagccaaggatgacttgccc 65
||||||||||||||||||||||||||||
Sbjct: 5 gtgtttggtagccaaggatgacttgccc 32
>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
trichocarpa
Length = 126
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgcccgctcc 70
|||||||||||||||||||||||||| |||||
Sbjct: 6 tgtttggtagccaaggatgacttgcctgctcc 37
>RF00865;MIR169_5;AASG02002697.1/26715-26592 3988:Ricinus communis
(castor bean)
Length = 124
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 253 cgggcagtctccttggctatgctgaccaact 283
|||||||||||||||||||||||||| ||||
Sbjct: 39 cgggcagtctccttggctatgctgacaaact 9
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 40 gtttggtagccaaggatgacttgcccgctc 69
|||||||||||||||||||||| |||||||
Sbjct: 111 gtttggtagccaaggatgactttcccgctc 82
>RF00645;MIR169_2;AASG02002697.1/26599-26709 3988:Ricinus communis
(castor bean)
Length = 111
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 253 cgggcagtctccttggctatgctgaccaact 283
|||||||||||||||||||||||||| ||||
Sbjct: 79 cgggcagtctccttggctatgctgacaaact 109
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 gtttggtagccaaggatgacttgcccgctc 69
|||||||||||||||||||||| |||||||
Sbjct: 7 gtttggtagccaaggatgactttcccgctc 36
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 39 tgtttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||||
Sbjct: 131 tgtttggtagccaaggatgacttgcc 106
>RF00865;MIR169_5;ABIM01022203.1/1875-2012 3649:Carica papaya
(papaya)
Length = 138
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 39 tgtttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||||
Sbjct: 123 tgtttggtagccaaggatgacttgcc 98
>RF00865;MIR169_5;AASG02003632.1/18323-18451 3988:Ricinus communis
(castor bean)
Length = 129
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 40 gtttggtagccaaggatgacttgccc 65
||||||||||||||||||||||||||
Sbjct: 114 gtttggtagccaaggatgacttgccc 89
>RF00645;MIR169_2;ABIM01022203.1/2003-1881 3649:Carica papaya
(papaya)
Length = 123
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||||
Sbjct: 7 tgtttggtagccaaggatgacttgcc 32
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||||
Sbjct: 7 tgtttggtagccaaggatgacttgcc 32
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AASG02003632.1/18444-18329 3988:Ricinus communis
(castor bean)
Length = 116
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 gtttggtagccaaggatgacttgccc 65
||||||||||||||||||||||||||
Sbjct: 9 gtttggtagccaaggatgacttgccc 34
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 40 gtttggtagccaaggatgacttgcc 64
|||||||||||||||||||||||||
Sbjct: 127 gtttggtagccaaggatgacttgcc 103
>RF00865;MIR169_5;AASG02002697.1/24175-24333 3988:Ricinus communis
(castor bean)
Length = 159
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 40 gtttggtagccaaggatgacttgcc 64
|||||||||||||||||||||||||
Sbjct: 145 gtttggtagccaaggatgacttgcc 121
>RF00865;MIR169_5;AASG02003632.1/6210-6338 3988:Ricinus communis
(castor bean)
Length = 129
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 43 tggtagccaaggatgacttgcccgc 67
|||||||||||||||||||||||||
Sbjct: 110 tggtagccaaggatgacttgcccgc 86
>RF00865;MIR169_5;AASG02003941.1/7647-7771 3988:Ricinus communis
(castor bean)
Length = 125
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 39 tgtttggtagccaaggatgacttgcccgctcca 71
|||||| |||||||||||||||||||| |||||
Sbjct: 113 tgtttgatagccaaggatgacttgcccactcca 81
>RF00865;MIR169_5;AASG02001447.1/39455-39304 3988:Ricinus communis
(castor bean)
Length = 152
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 40 gtttggtagccaaggatgacttgcc 64
|||||||||||||||||||||||||
Sbjct: 138 gtttggtagccaaggatgacttgcc 114
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 gtttggtagccaaggatgacttgcc 64
|||||||||||||||||||||||||
Sbjct: 10 gtttggtagccaaggatgacttgcc 34
>RF00645;MIR169_2;AASG02003632.1/6331-6216 3988:Ricinus communis
(castor bean)
Length = 116
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tggtagccaaggatgacttgcccgc 67
|||||||||||||||||||||||||
Sbjct: 13 tggtagccaaggatgacttgcccgc 37
>RF00645;MIR169_2;AASG02003941.1/7763-7653 3988:Ricinus communis
(castor bean)
Length = 111
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgcccgctcca 71
|||||| |||||||||||||||||||| |||||
Sbjct: 5 tgtttgatagccaaggatgacttgcccactcca 37
>RF00645;MIR169_2;AASG02001447.1/39312-39449 3988:Ricinus communis
(castor bean)
Length = 138
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 gtttggtagccaaggatgacttgcc 64
|||||||||||||||||||||||||
Sbjct: 7 gtttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AASG02002697.1/24326-24181 3988:Ricinus communis
(castor bean)
Length = 146
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 gtttggtagccaaggatgacttgcc 64
|||||||||||||||||||||||||
Sbjct: 8 gtttggtagccaaggatgacttgcc 32
>RF00865;MIR169_5;AY551202.1/194-30 3702:Arabidopsis thaliana (thale
cress)
Length = 165
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 151 tttggtagccaaggatgacttgcc 128
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 153 tttggtagccaaggatgacttgcc 130
>RF00865;MIR169_5;AY551200.1/193-29 3702:Arabidopsis thaliana (thale
cress)
Length = 165
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 151 tttggtagccaaggatgacttgcc 128
>RF00865;MIR169_5;AASG02003632.1/18586-18737 3988:Ricinus communis
(castor bean)
Length = 152
Score = 48.1 bits (24), Expect = 8e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 39 tgtttggtagccaaggatgacttgcccgctcc 70
|||||| ||||||||||||||||||| |||||
Sbjct: 140 tgtttgatagccaaggatgacttgcctgctcc 109
>RF00865;MIR169_5;CAAP02000001.1/222970-222840 29760:Vitis vinifera
Length = 131
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 43 tggtagccaaggatgacttgcccgctcc 70
|||||||||||||||||||||| |||||
Sbjct: 115 tggtagccaaggatgacttgcctgctcc 88
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 111 tttggtagccaaggatgacttgcc 88
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 111 tttggtagccaaggatgacttgcc 88
>RF00645;MIR169_2;AY551202.1/37-188 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 8 tttggtagccaaggatgacttgcc 31
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 7 tttggtagccaaggatgacttgcc 30
>RF00645;MIR169_2;AB016889.1/38604-38454 3702:Arabidopsis thaliana
(thale cress)
Length = 151
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 7 tttggtagccaaggatgacttgcc 30
>RF00645;MIR169_2;AASG02003632.1/18730-18592 3988:Ricinus communis
(castor bean)
Length = 139
Score = 48.1 bits (24), Expect = 8e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgcccgctcc 70
|||||| ||||||||||||||||||| |||||
Sbjct: 6 tgtttgatagccaaggatgacttgcctgctcc 37
>RF00645;MIR169_2;CAAP02000001.1/222847-222964 29760:Vitis
vinifera
Length = 118
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 tggtagccaaggatgacttgcccgctcc 70
|||||||||||||||||||||| |||||
Sbjct: 10 tggtagccaaggatgacttgcctgctcc 37
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgcc 32
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tttggtagccaaggatgacttgcc 64
||||||||||||||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgcc 32
>RF00865;MIR169_5;AARH01004262.1/367-494 3694:Populus trichocarpa
Length = 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 39 tgtttggtagccaaggatgacttgccc 65
||||||||||||||||| |||||||||
Sbjct: 117 tgtttggtagccaaggacgacttgccc 91
>RF00645;MIR169_2;AARH01004261.1/78455-78341 3694:Populus
trichocarpa
Length = 115
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 tgtttggtagccaaggatgacttgccc 65
||||||||||||||||| |||||||||
Sbjct: 5 tgtttggtagccaaggacgacttgccc 31
