miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 23 ccgtcccanaatgtaagacgttttttgacactancatagtgtccaaaaacgtcctatatt 82
|||||||| |||||||||||||||||||||||| | |||| |||||| |||||||||
Sbjct: 81 ccgtcccataatgtaagacgttttttgacactacgcttatgtcaaaaaacatcctatatt 22
Query: 83 atgggacggggggagta 99
||||||||| |||||||
Sbjct: 21 atgggacggagggagta 5
Score = 63.9 bits (32), Expect = 4e-10
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 14 ctacttcccccgtcccanaatgtaagacgttttttgacactancatagtgtccaaaaacg 73
||||| || |||||||| ||| || || ||||||||||| | | ||||||| |||||||
Sbjct: 4 ctactccctccgtcccataatataggatgttttttgacataagcgtagtgtcaaaaaacg 63
Query: 74 tcctatattatgggacggggggagta 99
|| || |||||||||||| |||||||
Sbjct: 64 tcttacattatgggacggagggagta 89
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 85.7 bits (43), Expect = 1e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 34 tgtaagacgttttttgacactancatagtgtccaaaaacgtcctatattatgggacgggg 93
|||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| |
Sbjct: 42 tgtaagacgttttttgacactagtgtagtgtcaaaaaacgtcctacattatgggacggag 101
Query: 94 ggagta 99
||||||
Sbjct: 102 ggagta 107
Score = 67.9 bits (34), Expect = 3e-11
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 12 aactacttcccccgtcccanaatgtaagacgttttttgacactancatagtgtccaaaaa 71
||||||| || |||||||| |||||| ||||||||||||||||| ||||||| |||||
Sbjct: 110 aactactccctccgtcccataatgtaggacgttttttgacactacactagtgtcaaaaaa 51
Query: 72 cgtc 75
||||
Sbjct: 50 cgtc 47
Score = 52.0 bits (26), Expect = 2e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 23 ccgtcccanaatgtaagacgttttttgac 51
|||||||| ||||||||||||||||||||
Sbjct: 13 ccgtcccataatgtaagacgttttttgac 41
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 85.7 bits (43), Expect = 1e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 34 tgtaagacgttttttgacactancatagtgtccaaaaacgtcctatattatgggacgggg 93
||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| | |
Sbjct: 22 tgtaagacgttttttgacactgtcatagtgtcaaaaaacgtcttatattatgggacagag 81
Query: 94 ggagta 99
||||||
Sbjct: 82 ggagta 87
Score = 58.0 bits (29), Expect = 3e-08
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 25 gtcccanaatgtaagacgttttttgacactancatagtgtccaaaaacgtc 75
|||||| ||| |||||||||||||||||||| | |||||| |||||||||
Sbjct: 77 gtcccataatataagacgttttttgacactatgacagtgtcaaaaaacgtc 27
>RF00906;MIR1122;FJ711046.1/1205-1295 220462:Leymus arenarius
Length = 91
Score = 81.8 bits (41), Expect = 2e-15
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 34 tgtaagacgttttttgacactancatagtgtccaaaaacgtcctatattatgggac 89
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct: 70 tgtaagacgttttttgacactgtcatagtgtcaaaaaacgtcttatattatgggac 15
Score = 58.0 bits (29), Expect = 3e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 25 gtcccanaatgtaagacgttttttgacactancatagtgtccaaaaacgtc 75
|||||| ||| |||||||||||||||||||| | |||||| |||||||||
Sbjct: 15 gtcccataatataagacgttttttgacactatgacagtgtcaaaaaacgtc 65
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 69.9 bits (35), Expect = 7e-12
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 23 ccgtcccanaatgtaagacgttttttgacactancatagtgtccaaaaacgtcctatatt 82
|||||||| ||||||||||| |||||||||||| |||||| |||||||| ||||||
Sbjct: 13 ccgtcccataatgtaagacgctttttgacactacactagtgtggaaaaacgttttatatt 72
Query: 83 atgggacggggggagta 99
||||||| | |||||||
Sbjct: 73 atgggacagagggagta 89
Score = 50.1 bits (25), Expect = 6e-06
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 25 gtcccanaatgtaagacgttttttgacactancatagtgtccaaaaacgtcctatattat 84
|||||| ||| ||| |||||||| |||||| ||||||| |||| |||| || |||||
Sbjct: 79 gtcccataatataaaacgtttttccacactagtgtagtgtcaaaaagcgtcttacattat 20
Query: 85 gggacggggggagta 99
||||||| |||||||
Sbjct: 19 gggacggagggagta 5
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 60.0 bits (30), Expect = 6e-09
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 15 tacttcccccgtcccanaatgtaagacgtt--ttttgacactancatagtgtccaaaaac 72
||||||| |||||||| ||||||||||||| |||| |||||| ||||||| ||| ||
Sbjct: 91 tacttcctccgtcccataatgtaagacgtttttttttacactatactagtgtcaaaagac 32
Query: 73 gtcctatattatgggacggggggagta 99
||||| |||||||||| | |||||||
Sbjct: 31 atcctacattatgggacagcgggagta 5
>RF00906;MIR1122;EF115142.1/468-377 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 92
Score = 60.0 bits (30), Expect = 6e-09
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 44 tttttgacactancatagtgtccaaaaacgtcctatattatgggacggggggagtaa 100
||||||||||| ||||||||| ||||||||| ||||||||| |||| ||||||||
Sbjct: 33 tttttgacactggcatagtgtcaaaaaacgtcttatattatgttacggagggagtaa 89
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 60.0 bits (30), Expect = 6e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 23 ccgtcccanaatgtaagacgttttttgacacta 55
|||||||| ||||||||||||||||||||||||
Sbjct: 88 ccgtcccataatgtaagacgttttttgacacta 56
Score = 58.0 bits (29), Expect = 3e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 24 cgtcccanaatgtaagacgttttttgacacta 55
||||||| ||||||||||||||||||||||||
Sbjct: 14 cgtcccataatgtaagacgttttttgacacta 45
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 60.0 bits (30), Expect = 6e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 23 ccgtcccanaatgtaagacgttttttgacacta 55
|||||||| ||||||||||||||||||||||||
Sbjct: 59 ccgtcccataatgtaagacgttttttgacacta 27
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 56.0 bits (28), Expect = 1e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 14 ctacttcccccgtcccanaatgtaagacgtttttt 48
|||||||| |||||||| |||||||||||||||||
Sbjct: 4 ctacttcctccgtcccataatgtaagacgtttttt 38
Score = 48.1 bits (24), Expect = 2e-05
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 23 ccgtcccanaatgtaagacgttttttgacactancatagtgtc-caaaaacgtcctatat 81
|||||||| |||||||||||| |||| ||| || ||||||| ||||||||| || ||
Sbjct: 82 ccgtcccaaaatgtaagacgtcttttaacattagtgtagtgtcaaaaaaacgtcttacat 23
Query: 82 tatgggacgg 91
||||||||||
Sbjct: 22 tatgggacgg 13
>RF00906;MIR1122;DQ247832.1/803-901 4487:Aegilops searsii
Length = 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 23 ccgtcccanaatgtaagacgttttttgacacta 55
|||||||| ||||||||||||||| ||||||||
Sbjct: 88 ccgtcccataatgtaagacgttttntgacacta 56
Score = 52.0 bits (26), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 24 cgtcccanaatgtaagacgttttttgacacta 55
||||||| ||||||||||||||| ||||||||
Sbjct: 14 cgtcccataatgtaagacgttttntgacacta 45
>RF00906;MIR1122;EU660903.1/8169-8251 4565:Triticum aestivum
(bread wheat)
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 59 tagtgtccaaaaacgtcctatattatgggacggggggagta 99
||||||| |||||||||||| |||||||||| | |||||||
Sbjct: 45 tagtgtcaaaaaacgtcctacattatgggactgagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 25 gtcccanaatgtaagacgttttttgacacta 55
|||||| |||||| |||||||||||||||||
Sbjct: 15 gtcccataatgtaggacgttttttgacacta 45
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 32 aatgtaagacgttttttgacactancatagtgtccaaaaacgtcctatattatgggacgg 91
|||||||||| |||||||||||| |||| || |||||| || || ||||||||||||
Sbjct: 72 aatgtaagacactttttgacactagtgtagtatcaaaaaacctcttacattatgggacgg 13
Query: 92 ggggagta 99
|||||||
Sbjct: 12 agggagta 5
>RF01058;MIR806;AAAA02003762.1/8891-8652 39946:Oryza sativa Indica
Group
Length = 240
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tatattatgggacggggggagtaa 100
||||||||||||||||||||||||
Sbjct: 217 tatattatgggacggggggagtaa 240
>RF00906;MIR1122;EF397435.1/125-217 4588:Lophopyrum elongatum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 26 tcccanaatgtaagacgttttttgacactancatagtgtccaaaaacgtcctatattatg 85
||||| |||||||||||||||| | |||| ||||| | ||||||||| || ||||||
Sbjct: 78 tcccataatgtaagacgtttttacaaactaacatagcttgcaaaaacgtattacattatg 19
Query: 86 ggacgg 91
||||||
Sbjct: 18 ggacgg 13
>RF01058;MIR806;AAAA02020204.1/6387-6629 39946:Oryza sativa Indica
Group
Length = 243
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 77 tatattatgggacggggggagta 99
|||||||||||||||||||||||
Sbjct: 24 tatattatgggacggggggagta 2
>RF00906;MIR1122;EU835198.1/120580-120672 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tatattatgggacggggggagtaatat 103
||||||||||||||| |||||||||||
Sbjct: 67 tatattatgggacggagggagtaatat 93
>RF00906;MIR1122;AAAA02030479.1/4787-4952 39946:Oryza sativa Indica
Group
Length = 166
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tatattatgggacggggggagtaatat 103
||||||||||||||| |||||||||||
Sbjct: 140 tatattatgggacggagggagtaatat 166
>RF00906;MIR1122;AACV01022113.1/70289-70455 39947:Oryza sativa
Japonica Group
Length = 167
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tatattatgggacggggggagtaatat 103
||||||||||||||| |||||||||||
Sbjct: 141 tatattatgggacggagggagtaatat 167
>RF00906;MIR1122;AJ507395.1/8084-8185 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 70 aacgtcctatattatgggacggggggagta 99
|||||| ||||||||||||||| |||||||
Sbjct: 34 aacgtcttatattatgggacggagggagta 5
>RF00906;MIR1122;AJ234502.1/104-174 4513:Hordeum vulgare
Length = 71
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 78 atattatgggacggggggagtaatat 103
|||||||||||||| |||||||||||
Sbjct: 26 atattatgggacggagggagtaatat 1
>RF00906;MIR1122;AAAA02018486.1/27307-27424 39946:Oryza sativa
Indica Group
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 77 tatattatgggacggggggagtaata 102
||||||||||||||| ||||||||||
Sbjct: 27 tatattatgggacggagggagtaata 2
>RF00906;MIR1122;AP004687.2/98890-98773 39947:Oryza sativa Japonica
Group
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tatattatgggacggggggagtaata 102
||||||||||||||| ||||||||||
Sbjct: 92 tatattatgggacggagggagtaata 117
>RF00906;MIR1122;AP002865.1/97444-97566 39947:Oryza sativa Japonica
Group
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tatattatgggacggggggagtaata 102
||||||||||||||| ||||||||||
Sbjct: 97 tatattatgggacggagggagtaata 122
>RF00906;MIR1122;AC137623.3/3519-3674 39947:Oryza sativa Japonica
Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 ctatattatgggacggggggagtaat 101
|||||||||||||||| |||||||||
Sbjct: 129 ctatattatgggacggagggagtaat 154
>RF00906;MIR1122;AC090120.8/86565-86433 4530:Oryza sativa (rice)
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tatattatgggacggggggagtaata 102
||||||||||||||| ||||||||||
Sbjct: 107 tatattatgggacggagggagtaata 132
