miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 cttatatttctttacggagggagtagtt 71
||||||||||||||||||||||||||||
Sbjct: 65 cttatatttctttacggagggagtagtt 92
Score = 46.1 bits (23), Expect = 6e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 30 gtgatctagacgtgcttatatttctttacggagggagta 68
|||||||||||| ||||||||||||||| || ||||||
Sbjct: 43 gtgatctagacgctcttatatttctttacagaaggagta 5
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 cttatatttctttacggagggagta 68
|||||||||||||||||||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 44 cttatatttctttacggagggagta 68
|||||||||||||||||||||||||
Sbjct: 29 cttatatttctttacggagggagta 5
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 30 gtgatctagacgtgcttatatttctttacgga 61
|||||||| |||| ||||||||||||||||||
Sbjct: 43 gtgatctaaacgttcttatatttctttacgga 12
Score = 46.1 bits (23), Expect = 6e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 30 gtgatctagacgtgcttatatttctttacggagggagta 68
|||||||||||| ||| |||||||||||||| ||||||
Sbjct: 54 gtgatctagacgctcttgtatttctttacggatggagta 92
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 46.1 bits (23), Expect = 6e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 30 gtgatctagacgtgcttatatttctttacggagggagta 68
|||||||| ||| ||||||||||||||| |||||||||
Sbjct: 43 gtgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 30 gtgatctagacgtgcttatatttctttacggagggagta 68
|||||||| || | ||||||||||| |||||||||||||
Sbjct: 43 gtgatctaaacattcttatatttctgtacggagggagta 5
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttatatttctttacggagggagta 68
||||||||||||||| |||||||||
Sbjct: 65 cttatatttctttacagagggagta 89
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 30 gtgatctagacgtgcttatatttctttacggagggagta 68
|||||||| ||| ||||||||||||||| |||||||||
Sbjct: 45 gtgatctaaacgctcttatatttctttacagagggagta 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 31 tgatctagacgtgcttatatttctttacggagggagta 68
||||||| ||| ||||||||||||||| |||||||||
Sbjct: 42 tgatctaaacgctcttatatttctttacagagggagta 5
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 44 cttatatttctttacggagggagta 68
||||||||||||||| |||||||||
Sbjct: 29 cttatatttctttaccgagggagta 5
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 44 cttatatttctttacggagggagta 68
||||||||||||||| |||||||||
Sbjct: 29 cttatatttctttacagagggagta 5
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 30 gtgatctagacgtgcttatatttctttacggagggagtagt 70
|||||||| ||| ||||||||||||||| |||| ||||||
Sbjct: 43 gtgatctaaacgctcttatatttctttacagaggtagtagt 3
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttatatttctttacggagggagta 68
||||||||||||||| |||||||||
Sbjct: 63 cttatatttctttacagagggagta 87
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 44 cttatatttctttacggagggagtagttt 72
|||||||| |||||||||||||||||||
Sbjct: 65 cttatattagtttacggagggagtagttt 93
