miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaaggct 68
||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||| |||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 69 tt 70
||
Sbjct: 29 tt 28
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 6 aagtactccctctgtaaagaaatataaaaacgtttagat 44
||||||||||||||||||||||||||| | |||||||||
Sbjct: 86 aagtactccctctgtaaagaaatataagagcgtttagat 48
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaaacgtttagat 44
|||||||||||||||||||||||| | |||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagat 40
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 7 agtactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaa 64
||||||||||||||||| ||||||| | ||||||||| ||||||||||| ||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaa 60
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaa 64
||||||||||||||||||||||||| | |||||||| ||| |||||| |||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaa 32
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaaacgtttagat 44
|||||||||||||||||||||||| | |||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagat 40
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaa 64
||||||||||||||| ||||||||| | ||||||| |||||||| |||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaa 60
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaa 64
|||||||||||||||||||||||| | | ||||||| ||| |||||| |||||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaa 34
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 6 aagtactccctctgtaaagaaatataaaaacgtttaga 43
|||||||||||| |||||||||||||| | ||||||||
Sbjct: 2 aagtactccctcggtaaagaaatataagagcgtttaga 39
Score = 48.1 bits (24), Expect = 2e-05
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaaggc 67
||||||||||| ||||||||||||| | | ||||||| ||| |||||| |||||| ||
Sbjct: 90 gtactccctctataaagaaatataagagcatttagataactactttagtgctctaaacgc 31
Query: 68 t-ttatgtttctttaaggagggag 90
| |||| |||||||| |||||||
Sbjct: 30 tcttatatttctttaccgagggag 7
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaaggct-tta 71
|||||||||||||||||||| | ||||||||| ||| || ||| ||||||| ||| |||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 72 tgtttcttta 81
| ||||||||
Sbjct: 25 tatttcttta 16
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaaacgtttagat 44
|||| ||||||||||||||||||| | |||||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagat 40
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 7 agtactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaa 64
|||| |||||| |||||||||||||| | ||||||||| ||||||||| |||||||
Sbjct: 91 agtagtccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaa 34
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 agtactccctctgtaaagaaatataa 32
||||||||||||||||| ||||||||
Sbjct: 3 agtactccctctgtaaacaaatataa 28
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaaacgtttagat 44
|||||||||||||||| ||||||||||| |||||||
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagat 54
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaaacgttta 41
|||||||||||||||||||||||| | ||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgttta 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 ctccctctgtaaagaaatataa 32
||||||||||||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataa 55
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaaggct 68
||||||||||||||| ||||||| | | || |||| ||| |||||| ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 69 -ttatgtttctttaaggagggag 90
|||| |||||||| ||||||||
Sbjct: 65 cttatatttctttacggagggag 87
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 6 aagtactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaa 64
|||||||||||||||||| ||||||| | |||||||| ||| ||||||||| ||||
Sbjct: 2 aagtactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaa 60
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 6 aagtactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatctaaa 64
|||||||||| ||||||| ||||||||| | |||||| ||| ||||||||||||||
Sbjct: 92 aagtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaa 34
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaaacgtttag 42
||||||||| |||||||||||||| | |||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttag 38
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 gtaaagaaatataaaaacgtttagat 44
|||||||||||||| |||||||||||
Sbjct: 15 gtaaagaaatataagaacgtttagat 40
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaaacgtttagattgctattttagtaatcta 62
||||||||| |||||||||||||| | |||||||| ||| |||||| |||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatcta 36
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 7 agtactccctctgtaaagaaatataaaaacgtttagat 44
||||||||||||||||| ||||||||| ||||||||
Sbjct: 3 agtactccctctgtaaactaatataaaagtgtttagat 40
