miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtgaccctaagtgc 68
||||||||||||||| ||||||| ||| || ||| |||||||||||||| |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtga-tctaaatgc 63
Query: 69 tcttatacttctttacggaggga 91
||||||| |||||||||||||||
Sbjct: 64 tcttatatttctttacggaggga 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacacta 49
||||||||| |||||||||||||| ||| |||||| |||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcacta 49
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 5 tatgtactccctctgtaaagaaatataaaagcgtttagaacactactttagtgaccctaa 64
|||||||||||||| ||||||||||||| ||| |||||| |||||||||||| | ||||
Sbjct: 93 tatgtactccctctataaagaaatataagagcatttagataactactttagtg-ctctaa 35
Query: 65 gtgctcttatacttctttacggaggga 91
||||||||| |||||||| ||||||
Sbjct: 34 acgctcttatatttctttaccgaggga 8
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacacta 49
|||||||||| |||||||||||||| |||||||||| |||||
Sbjct: 4 gtactccctcggtaaagaaatataagagcgtttagagcacta 45
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 77.8 bits (39), Expect = 2e-14
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcactactttagtga 38
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataaaagcgtttagaacactactttagtgaccctaagtgctctt 72
|||||||||||||||||||| |||||||||| |||||||| ||||| |||| ||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtga-tctaaacgctctt 27
Query: 73 atacttctttacggagg 89
||| |||||||| ||||
Sbjct: 26 atatttctttacagagg 10
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacact 48
|||| ||||||||||||||||||| |||||||||| ||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcact 44
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacacta 49
||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 84 gtactccctctgtaaagaaatataagagcgtttagatcacta 43
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttaga 43
|||||||||||||||||||||||| ||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttaga 39
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacactactttagt 56
|||||||| ||||||| ||||||||||| |||||||||||||||||||
Sbjct: 90 gtactccccctgtaaactaatataaaagcatttagaacactactttagt 42
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttaga 43
||||||||||||||| ||||||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttaga 39
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 15 ctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
||||||||| |||||||| |||||||||| ||||||||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcactactttagtga 54
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtgaccctaagtgc 68
||||||||||||||| ||||||| |||| ||||| |||||||||||||| ||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtga-tctaagcgc 63
Query: 69 tcttata 75
|||||||
Sbjct: 64 tcttata 70
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 60.0 bits (30), Expect = 6e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
||||||||| |||||||||||||| ||||||||| |||||||| |||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtga 54
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
||||||||| ||||| ||||||| |||||||||||||||| ||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtga 40
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
||||||||| |||||||||||||| || ||||||| |||||||||||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtga 40
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 7 tgtactccctctgtaaagaaatataaaagcgtttagaacacta 49
|||||||| ||||||||||||||||| ||||| |||| |||||
Sbjct: 3 tgtactccttctgtaaagaaatataagagcgtctagatcacta 45
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
|||||||||||||||||||||||| | | |||||| |||||||||||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtga 40
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacacta 49
|||||||||||||||||||||||| | |||||||| |||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcacta 45
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacactactttagt 56
|||||||||||||||| ||||||| |||||||||| ||||| ||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttagatcactattttagt 52
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 7 tgtactccctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
||||||||||||||||| ||||||| | | |||||| ||||||||||||||
Sbjct: 91 tgtactccctctgtaaactaatataagaccttttagatcactactttagtga 40
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 12 tccctctgtaaagaaatataaaagcgtttagaacactactttag 55
|||||| |||||||||||||| |||||||||| ||||| |||||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttag 43
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttaga 43
|||||||||||||||| |||||||| |||||||||
Sbjct: 4 gtactccctctgtaaacaaatataagggcgtttaga 39
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 70/83 (84%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtgaccctaagtgc 68
|||| |||||||||| ||||||| ||| |||||| ||||| |||||||||| ||| ||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacc-taaacgc 31
Query: 69 tcttatacttctttacggaggga 91
||||||| | ||||||||||||
Sbjct: 30 tcttatattagtttacggaggga 8
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacacta 49
|||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatacta 45
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagt 56
||||||||||||||| ||||||| | |||||||| ||||| ||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagt 42
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactacttta 54
||||||||||||||| ||||||||||| |||||| ||||| ||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactatttta 50
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
||||||||| ||||| ||||||| |||||||||| |||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtga 54
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacactactttagt 56
||||||||| |||||| ||||||||||| |||||| || |||||||||
Sbjct: 90 gtactccctttgtaaactaatataaaagcatttagatcattactttagt 42
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacactactttagt 56
|||||||||||||||| ||||||| || ||||||| ||||| ||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagatcactagtttagt 52
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgttta 41
|||||||||||||||||||||||| | ||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgttta 37
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 11 ctccctctgtaaagaaatataaaagcgtttagaacacta 49
|||||||||||||||||||||| | | |||||| |||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcacta 38
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacactactt 52
|||||||||||||||| ||||||| ||| |||||| ||||||||
Sbjct: 89 gtactccctctgtaaactaatataagagcatttagatcactactt 45
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacacta 49
||||||||||||||| ||||||| |||||||||| |||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcacta 45
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 26 aatataaaagcgtttagaacactactttagtga 58
||||||| |||||||||| ||||||||||||||
Sbjct: 72 aatataagagcgtttagatcactactttagtga 40
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 6 atgtactccctctgtaaagaaatataaaagcgttta 41
|||||||||||||||||| ||||||||||| ||||
Sbjct: 2 atgtactccctctgtaaactaatataaaagcattta 37
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttaga 43
|||||||||||||||| |||||||||| |||||||
Sbjct: 4 gtactccctctgtaaactaatataaaagtgtttaga 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaac 45
|||||||||| ||||| ||||||| ||||||||||||
Sbjct: 88 gtactccctccgtaaactaatataagagcgtttagaac 51
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactact 51
|||||||||||| || |||||| | |||||||||| |||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcactact 47
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 7 tgtactccctctgtaaagaaatataaaagcgtttagaacacta 49
||||||||||||||||| ||||||||| | |||||| |||||
Sbjct: 91 tgtactccctctgtaaactaatataaaaacatttagatcacta 49
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataaaagcgtttagaacactactttagtga 58
||||||||| ||||| ||||||| || ||||||| |||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtga 54
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttag 42
|||||||||||||||| ||||||| |||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttag 38
Score = 44.1 bits (22), Expect = 3e-04
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 26 aatataaaagcgtttagaacactactttagtgaccctaagtgctcttatacttctttacg 85
||||||| |||||||||| ||||| |||| ||| | ||| |||||||||| | ||||||
Sbjct: 67 aatataagagcgtttagatcactattttaatgatc-taaatgctcttatattagtttacg 125
Query: 86 gaggga 91
||||||
Sbjct: 126 gaggga 131
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaac 45
|||||||||| ||||| ||||||| ||||||||||||
Sbjct: 88 gtactccctccgtaaactaatataatagcgtttagaac 51
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataaaagcgtttagaacacta 49
|||||||||||||||| ||||||| ||| |||||| |||||
Sbjct: 4 gtactccctctgtaaactaatataagagcttttagatcacta 45
