miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 50 taaaagctcttatatttctttacggagggag 80
|||| ||||||||||||||||||||||||||
Sbjct: 57 taaatgctcttatatttctttacggagggag 87
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 50 taaaagctcttatatttctttacggagggag 80
|||| ||||||||||||||||||||||||||
Sbjct: 37 taaacgctcttatatttctttacggagggag 7
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ctcttatatttctttacggagggag 80
|||||||||||||||||||||||||
Sbjct: 63 ctcttatatttctttacggagggag 87
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 50 taaaagctcttatatttctttacggagggag 80
|||| |||||||||||||||||| |||||||
Sbjct: 37 taaacgctcttatatttctttaccgagggag 7
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 50 taaaagctcttatatttctttacggagggag 80
|||| |||||||||||||||||| |||||||
Sbjct: 37 taaacgctcttatatttctttacagagggag 7
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 50 taaaagctcttatatttctttacggagggag 80
|||| |||||||||||||||||| |||||||
Sbjct: 51 taaacgctcttatatttctttacagagggag 81
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ctccctctgtaaagaaatataa 52
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaagaaatataa 28
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 ctccctctgtaaagaaatataa 52
||||||||||||||||||||||
Sbjct: 81 ctccctctgtaaagaaatataa 60
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ctccctctgtaaagaaatataa 52
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaagaaatataa 28
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ctccctctgtaaagaaatataa 52
||||||||||||||||||||||
Sbjct: 7 ctccctctgtaaagaaatataa 28
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tcttatatttctttacggagggagaa 82
|||||||||||||||| |||||||||
Sbjct: 53 tcttatatttctttacagagggagaa 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 ctccctctgtaaagaaatataa 52
||||||||||||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataa 55
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 ctccctctgtaaagaaatataa 52
||||||||||||||||||||||
Sbjct: 87 ctccctctgtaaagaaatataa 66
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 taaaagctcttatatttctttacggaggga 79
|||| |||||||||||||||||| ||||||
Sbjct: 57 taaacgctcttatatttctttactgaggga 86
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 ctccctctgtaaagaaatataa 52
||||||||||||||||||||||
Sbjct: 85 ctccctctgtaaagaaatataa 64
