miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 71/76 (93%), Gaps = 2/76 (2%)
Strand = Plus / Minus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
|||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 90 atacaccctctgtaaagaaatataagagcgtttagatcact--acttcagtgatctaaac 33
Query: 68 actcttatatttcttt 83
|||||||||||||||
Sbjct: 32 gctcttatatttcttt 17
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/75 (90%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
|||| ||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaa--gtagtgatctaaacg 62
Query: 69 ctcttatatttcttt 83
|||||||||||||||
Sbjct: 63 ctcttatatttcttt 77
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 67/71 (94%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 15 ctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaacactctta 74
||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcact--actttagtgatctagacactctta 68
Query: 75 tatttctttgc 85
|||||||||||
Sbjct: 69 tatttctttgc 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/72 (86%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
|||||| ||| | ||||||||||||||| || |||||||||| | |||||||||||||
Sbjct: 90 atactcactccgcaaagaaatataagagtgtctagatcactaaa--gtagtgatctaaac 33
Query: 68 actcttatattt 79
|||||||||||
Sbjct: 32 gctcttatattt 21
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 95.6 bits (48), Expect = 1e-19
Identities = 78/89 (87%), Gaps = 8/89 (8%)
Strand = Plus / Plus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4 atactccctctgtaaagaaatataagagcgtttagatca--------tagtgatctaaac 55
Query: 68 actcttatatttctttgcaaagggagtac 96
||||||||||||||| || |||||||||
Sbjct: 56 gctcttatatttctttacagagggagtac 84
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/87 (87%), Gaps = 8/87 (9%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcacta--------tgatctaaacg 32
Query: 69 ctcttatatttctttgcaaagggagta 95
||||||||||||||| || ||||||||
Sbjct: 31 ctcttatatttctttacagagggagta 5
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 93.7 bits (47), Expect = 4e-19
Identities = 59/62 (95%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcact--actttagtgatctaaaca 30
Query: 69 ct 70
||
Sbjct: 29 ct 28
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 55 tagtgatctaaacactcttatatttctttgcaaagggagtac 96
||||||||||||||||||||||||||||| || |||||||||
Sbjct: 47 tagtgatctaaacactcttatatttctttacagagggagtac 88
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
|||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataact--actttagtgatctaaaca 32
Query: 69 ctcttatatttct 81
||||||||||||
Sbjct: 31 ttcttatatttct 19
Score = 56.0 bits (28), Expect = 9e-08
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||| |||||||||||| ||||||||||||| | |||| |||||||
Sbjct: 5 tactccctccgtacagaaatataagaatgtttagatcactaaa--gtagttatctaaatg 62
Query: 69 ctcttatatttctttgcaaagggagta 95
|||||||||||||| || ||||||||
Sbjct: 63 atcttatatttctttacagagggagta 89
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 89.7 bits (45), Expect = 6e-18
Identities = 79/89 (88%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactac-actttagtgatctaaa 66
||||||||||||| || |||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 4 atactccctctgtgaataaatatgagagcgtttagatcactactactctagtgatctaaa 63
Query: 67 cactcttatatttctttgcaaagggagta 95
| |||||||||| ||| || ||||||||
Sbjct: 64 cgctcttatattattttacatagggagta 92
Score = 63.9 bits (32), Expect = 4e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacact-ttagtgatctaaac 67
|||||||| |||||| |||||||||||||||||||||||| | | |||||||||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcactagagtagtagtgatctaaac 33
Query: 68 actcttatattt 79
|||| ||||||
Sbjct: 32 gctctcatattt 21
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
|||||||||| ||||||||||||||||| ||||||| ||| ||||||||| |||||||
Sbjct: 89 tactccctctataaagaaatataagagcatttagataact--actttagtgctctaaacg 32
Query: 69 ctcttatatttctttgcaaagggagtac 96
||||||||||||||| | |||||||||
Sbjct: 31 ctcttatatttctttaccgagggagtac 4
Score = 73.8 bits (37), Expect = 4e-13
Identities = 76/88 (86%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||||||||||||||||||||||| ||||| | |||| |||||||
Sbjct: 5 tactccctcggtaaagaaatataagagcgtttagagcactaaa--gtagttatctaaatg 62
Query: 69 ctcttatatttctttgcaaagggagtac 96
||||||||||||||| | |||||||||
Sbjct: 63 ctcttatatttctttatagagggagtac 90
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||| ||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataact--actttagtgatctagacg 32
Query: 69 ctcttatatttctttgcaaagggagtac 96
||||||||||||||| || | |||||||
Sbjct: 31 ctcttatatttctttacagaaggagtac 4
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/75 (90%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
|||||| ||||||||||||||||||||||| |||||||||| | |||| |||||||||
Sbjct: 5 tactccttctgtaaagaaatataagagcgtctagatcactaaa--gtagttatctaaaca 62
Query: 69 ctcttatatttcttt 83
|||||||||||||||
Sbjct: 63 ctcttatatttcttt 77
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 70/78 (89%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 agatactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaa 65
|||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||
Sbjct: 2 agatactccctctgtaaactaatataagagcattcagatcact--actttagtgatctaa 59
Query: 66 acactcttatatttcttt 83
| |||||||||||||||
Sbjct: 60 atgctcttatatttcttt 77
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcacta 49
||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcacta 49
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/74 (90%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 6 agatactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaa 65
|||||||||||| |||||||||||||||||||||||| ||||| |||| |||||||| |
Sbjct: 2 agatactccctccgtaaagaaatataagagcgtttaggtcact--acttgagtgatctga 59
Query: 66 acactcttatattt 79
|| |||||||||||
Sbjct: 60 acgctcttatattt 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/65 (86%), Gaps = 2/65 (3%)
Strand = Plus / Minus
Query: 19 gtaaagaaatataagagcgtttagatcactacactttagtgatctaaacactcttatatt 78
||||| ||||||||||||||| |||||||| | |||||| |||||| ||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaa--gtagtgacctaaacgctcttatatt 22
Query: 79 tcttt 83
|||||
Sbjct: 21 tcttt 17
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 12 tccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaacactc 71
|||||| |||||||||||||||||||||||||||||| | ||||| ||||||||| | |
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcact--attttagagatctaaacgccc 29
Query: 72 ttatatttctttgcaaagggagtac 96
|||||||| ||| || |||||||||
Sbjct: 28 ttatatttgtttacagagggagtac 4
Score = 79.8 bits (40), Expect = 6e-15
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||| ||||||||| ||||||||||| ||| | |||||||||||||
Sbjct: 5 tactccctctgtaaacaaatataagggcgtttagatctctaaa--atagtgatctaaacg 62
Query: 69 ctcttatatttcttt 83
|||||||||||||||
Sbjct: 63 ctcttatatttcttt 77
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
|||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |
Sbjct: 4 atactccctctgtaaactaatataagagcgcttagatcact--actttagtgatctaagc 61
Query: 68 actcttatatttctttgcaaagggagta 95
|||||||||| ||| || ||||||||
Sbjct: 62 gctcttatattagtttacagagggagta 89
Score = 63.9 bits (32), Expect = 4e-10
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||| |||||||||||| ||||||||||| | ||||||||||| |
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaa--gtagtgatctaagcg 32
Query: 69 ctcttatatttctttgcaaagggagta 95
|||||||||| ||| || ||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 79.8 bits (40), Expect = 6e-15
Identities = 64/71 (90%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
|||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct: 4 atactccctctgtaaactaatataagagcgtttagatcactaaa--gtagtgatctaaac 61
Query: 68 actcttatatt 78
||||||||||
Sbjct: 62 gctcttatatt 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 26 aatataagagcgtttagatcactacactttagtgatctaaacactcttatatttctttgc 85
||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |
Sbjct: 72 aatataagagcgtttagatcactac--tttagtgatctaaacgctcttatattagtttac 15
Query: 86 aaagggagta 95
| ||||||||
Sbjct: 14 agagggagta 5
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/70 (90%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactat--tttagtgatctaaaca 32
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 31 ctcttatatt 22
Score = 54.0 bits (27), Expect = 4e-07
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
|||||||||| |||| |||||||||| ||||||||||||| | ||||| |||||||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcactaaa--atagtgttctaaacg 62
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 63 ctcttatatt 72
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 7 gatactccctctgtaaagaaatataagagcgtttagatcacta 49
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3 gatactccctctgtaaagaaatataagatcgtttagatcacta 45
Score = 67.9 bits (34), Expect = 2e-11
Identities = 68/79 (86%), Gaps = 4/79 (5%)
Strand = Plus / Minus
Query: 21 aaagaaatataagagcgtttagatcactac----actttagtgatctaaacactcttata 76
|||||||||||||| | ||||||||||||| | ||||||||||||||| |||||||
Sbjct: 83 aaagaaatataagatcatttagatcactactactattttagtgatctaaacgatcttata 24
Query: 77 tttctttgcaaagggagta 95
||||||| || ||||||||
Sbjct: 23 tttctttacagagggagta 5
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 75.8 bits (38), Expect = 1e-13
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 19 gtaaagaaatataagagcgtttagatcactac-actttagtgatctaaacactcttatat 77
|||||||||||||||| ||||||||||||||| | |||||||||||| || ||||| |||
Sbjct: 15 gtaaagaaatataagaacgtttagatcactactattttagtgatctagacgctcttgtat 74
Query: 78 ttcttt 83
||||||
Sbjct: 75 ttcttt 80
Score = 65.9 bits (33), Expect = 9e-11
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacact-ttagtgatctaaa 66
||||||| || ||||||||||| |||||||| |||||||||| | | ||||||||||||
Sbjct: 93 atactccatccgtaaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaa 34
Query: 67 cactcttatatttcttt 83
| ||||||||||||||
Sbjct: 33 cgttcttatatttcttt 17
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
|||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 4 atactccctccgtaaattaatataagagcgtttagattact--actttagtgatctaaac 61
Query: 68 actcttata 76
||||||||
Sbjct: 62 gctcttata 70
Score = 54.0 bits (27), Expect = 4e-07
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
|||||| |||||||| | |||||||||||||||||||||| | |||| ||||||||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcactaaa--gtagtaatctaaacg 32
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 31 ctcttatatt 22
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaa--atagtgatctaaacg 62
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 63 ctcttatatt 72
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 26 aatataagagcgtttagatcactacactttagtgatctaaacactcttatatttctttgc 85
||||||||||||||||||||||| | |||||||||| |||| |||||||||| ||| |
Sbjct: 72 aatataagagcgtttagatcact--attttagtgatccaaacgctcttatattaatttac 15
Query: 86 aaagggagta 95
| ||||||||
Sbjct: 14 agagggagta 5
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcact--attttagtattctaaacg 62
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 63 ctcttatatt 72
Score = 58.0 bits (29), Expect = 2e-08
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||| |||||||||||||||||| |||| | |||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaa--atagtgatctaaacg 32
Query: 69 ctcttatatttctttgcaaagggagtac 96
|||||||||| ||| || |||||||||
Sbjct: 31 ctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 10 actccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaacac 69
|||||||| ||||| |||||||||||||||||||||||| | |||||||| ||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaa--atagtgatcaaaacac 31
Query: 70 tcttatatt 78
|||||||||
Sbjct: 30 tcttatatt 22
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||| |||||||||| |||| |||||||| |||||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagtgttttgatcactat--tttagtgatctaaacg 62
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 63 ctcttatatt 72
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
||||| |||||||||| ||||||||||| ||||||||||| | |||||||| ||||||
Sbjct: 90 atacttcctctgtaaactaatataagagcatttagatcact--attttagtgacctaaac 33
Query: 68 actcttatatt 78
||||||||||
Sbjct: 32 gctcttatatt 22
Score = 54.0 bits (27), Expect = 4e-07
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||| ||||||||||||||||| |||||| | ||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcactaaa--atagtgatctaaatg 62
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 63 ctcttatatt 72
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||| ||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattact--attttagtgatctaaatg 32
Query: 69 ctcttatatttctttgcaaagggagta 95
|||||||||| ||| || ||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||| ||||||||||| |||||||||||| | |||| ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaa--atagtaatctaaacg 62
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 63 ctcttatatt 72
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 63.9 bits (32), Expect = 4e-10
Identities = 61/70 (87%), Gaps = 3/70 (4%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcactac---ttaatgatctaaacg 32
Query: 69 ctcttatatt 78
|| |||||||
Sbjct: 31 cttttatatt 22
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/58 (89%), Gaps = 2/58 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaa 66
||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcact--actttagtgatctaaa 34
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatataagagcgtttagatcacta 49
|||||||||||| ||||||||| | ||||||||||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcacta 45
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 11 ctccctctgtaaagaaatataagagcgtttagatcacta 49
|||||||||||||||||||||||| | ||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcacta 38
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 atactccctctgtaaagaaatataagagcgttta 41
||||||||||||||||||||||||||| ||||||
Sbjct: 4 atactccctctgtaaagaaatataagatcgttta 37
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
|||||||||||||||| ||||||| || |||| || |||| ||| ||||||||||||
Sbjct: 90 atactccctctgtaaactaatataaaagtttttaaattactaaact--agtgatctaaac 33
Query: 68 actcttatatttctttgcaaagggagtac 96
||||||||||| ||| || |||||||||
Sbjct: 32 actcttatattagtttacagagggagtac 4
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||| |||||||||| |||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 60.0 bits (30), Expect = 6e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaa 66
||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||
Sbjct: 91 tactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaa 34
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatataagagcgtttagatcacta 49
|||||||||||| ||||||||| | ||||||||||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcacta 45
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcacta 49
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcttttagatcacta 45
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 38 tttagatcactacactttagtgatctaaacactcttatatttctttgcaaagggagtac 96
||||||||||||| |||||||||||||| |||||||||| ||| || |||||||||
Sbjct: 60 tttagatcactac--tttagtgatctaaaagctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattacta 45
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 56.0 bits (28), Expect = 9e-08
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaac 67
|||||||||| ||||| ||||||||||| ||||||||| || | |||||||||||||
Sbjct: 135 atactccctccgtaaactaatataagagcatttagatcattaaa--atagtgatctaaac 78
Query: 68 actcttatatt 78
||||||||||
Sbjct: 77 gctcttatatt 67
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttag 42
||||||||||||||| |||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttag 38
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/53 (88%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 26 aatataagagcgtttagatcactacactttagtgatctaaacactcttatatt 78
||||||||||||||||||||||| | |||| ||||||||| ||||||||||
Sbjct: 67 aatataagagcgtttagatcact--attttaatgatctaaatgctcttatatt 117
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 56.0 bits (28), Expect = 9e-08
Identities = 51/58 (87%), Gaps = 3/58 (5%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaa 66
||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcactac---ttagtgatctaaa 33
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||| ||||||||||| |||| |||| || | | |||||||||||||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaat--agtgatctaaaca 32
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 31 ctcttatatt 22
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcacta 49
||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 51/58 (87%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaa 66
||||||||| ||||| |||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactac--tttagtgatctaaa 60
Score = 54.0 bits (27), Expect = 4e-07
Identities = 60/70 (85%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||||||||| ||||||| | | |||||||||||| | |||| |||||||||
Sbjct: 89 tactccctctgtaaactaatataaaaacatttagatcactaaa--gtagtaatctaaaca 32
Query: 69 ctcttatatt 78
||||||||||
Sbjct: 31 ctcttatatt 22
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 74/88 (84%), Gaps = 4/88 (4%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||| ||||||| |||||||||| |||| |||||| |||||||||
Sbjct: 87 tactccctccgtaaactaatataatagcgtttaga--actat--tttagttatctaaaca 32
Query: 69 ctcttatatttctttgcaaagggagtac 96
|||||||||| ||| || |||||||||
Sbjct: 31 ctcttatattagtttacagagggagtac 4
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcacta 49
||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagataacta 45
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 8 atactccctctgtaaagaaatataagagcgtttagatcacta 49
|||||||||||||||| ||||||| ||| ||||||||||||
Sbjct: 4 atactccctctgtaaactaatataaaagcatttagatcacta 45
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 74/88 (84%), Gaps = 4/88 (4%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaaca 68
||||||||| ||||| |||||||||||||||||| ||| | |||||| |||||||||
Sbjct: 87 tactccctccgtaaactaatataagagcgtttaga--act--attttagttatctaaaca 32
Query: 69 ctcttatatttctttgcaaagggagtac 96
|| ||||||| ||| || |||||||||
Sbjct: 31 cttttatattagtttacagagggagtac 4
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcgtttagatcacta 49
||||||||||| ||||||||||| ||||||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcacta 45
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgttt 40
||||||||||||||| |||||||||||||||
Sbjct: 96 tactccctctgtaaactaatataagagcgttt 65
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 69/83 (83%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 10 actccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaacac 69
|||||||| ||||| |||||||||| ||||||||||| | |||| |||||| ||| |
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcac--aattttaatgatctcaacgc 31
Query: 70 tcttatatttctttgcaaaggga 92
||||||||| ||| ||||||||
Sbjct: 30 tcttatattagtttacaaaggga 8
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/67 (85%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatataagagcgtttagatcactacactttagtgatctaaacactc 71
||||| |||||| |||||||||||||| |||||| || | || ||||||||||| |||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaatt--gtgatctaaactctc 65
Query: 72 ttatatt 78
|||||||
Sbjct: 66 ttatatt 72
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 60/71 (84%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 26 aatataagagcgtttagatcactacactttagtgatctaaacactcttatatttctttgc 85
||||||||||| |||||| ||||| |||||| ||||||| ||||||||||| ||| |
Sbjct: 72 aatataagagcatttagaacactat--tttagtaatctaaatactcttatattagtttac 15
Query: 86 aaagggagtac 96
| |||||||||
Sbjct: 14 agagggagtac 4
