miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
|||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgct 64
Query: 69 cttatattcctttacggaggg 89
|||||||| |||||| |||||
Sbjct: 65 cttatatttctttacagaggg 85
Score = 87.7 bits (44), Expect = 2e-17
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctctta 72
||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 73 tattcctttacggagg 88
|||| |||||| ||||
Sbjct: 25 tatttctttacagagg 10
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||| ||||||||||||||||| ||||||| ||||| |||||| ||||||||||
Sbjct: 4 gtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgc 63
Query: 68 tcttatattcctttacggagggag 91
||||||||| ||||| |||||||
Sbjct: 64 tcttatatttctttatagagggag 87
Score = 79.8 bits (40), Expect = 6e-15
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
||||||||||| |||||||||||||||| ||||||| |||| ||||| |||||| ||
Sbjct: 90 gtactccctctataaagaaatataagagcatttagataactactttagtgctctaaacgc 31
Query: 68 tcttatattcctttacggagggag 91
||||||||| |||||| |||||||
Sbjct: 30 tcttatatttctttaccgagggag 7
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
||||||| |||||||||||||||||||| || |||||||||| |||||| ||||||| |
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacac 63
Query: 68 tcttatattcctttacggagggag 91
||||||||| ||||||||||||||
Sbjct: 64 tcttatatttctttacggagggag 87
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| |||||||||||||||||||||||||| |||| |||||||||| | |||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgct 30
Query: 69 cttatattcctttac 83
|||||||| ||||||
Sbjct: 29 cttatatttctttac 15
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||| ||| |||||||||||| |||||||||||||| |||||| |||||||||
Sbjct: 4 gtactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatga 63
Query: 68 tcttatattcctttacggagggag 91
||||||||| |||||| |||||||
Sbjct: 64 tcttatatttctttacagagggag 87
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
|||||||||||||||||||||||||| ||||||| |||| |||||||||||| |
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacatt 30
Query: 69 cttatattcctttacggagggag 91
|||||||| || |||||||||||
Sbjct: 29 cttatatttctgtacggagggag 7
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 69 cttatattcctttacggagggag 91
|||||||| ||||| |||||||
Sbjct: 29 cttatattagtttacagagggag 7
Score = 93.7 bits (47), Expect = 4e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| |||||||||| || ||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 69 cttatattcctttacggagggag 91
|||||||| ||||||||||||||
Sbjct: 65 cttatatttctttacggagggag 87
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
||||||||||| |||| |||||||||||||||||||||||| | ||||| |||||| ||
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgc 63
Query: 68 tcttatattcctttacggagggag 91
||||||||| |||||||||||||
Sbjct: 64 tcttatattagtttacggagggag 87
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 69 cttatatt 76
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 69 cttatatt 76
||||||||
Sbjct: 65 cttatatt 72
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 26 aatataagagtgtttagatcactatagtagtgatctaaatgctcttatattcctttacgg 85
|||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacag 13
Query: 86 agggag 91
||||||
Sbjct: 12 agggag 7
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 93.7 bits (47), Expect = 4e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||||||||| ||||||||| | ||||||||| ||| | |||||||||||| ||
Sbjct: 4 gtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgc 63
Query: 68 tcttatattcctttacggaggga 90
||||||||| |||||| ||||||
Sbjct: 64 tcttatatttctttactgaggga 86
Score = 79.8 bits (40), Expect = 6e-15
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 12 tccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctctt 71
|||||| ||||||||||||||||| |||||||||||||| ||| |||||||| || |||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctt 27
Query: 72 atattcctttacggagggag 91
||||| ||||| |||||||
Sbjct: 26 atatttgtttacagagggag 7
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 89.7 bits (45), Expect = 6e-18
Identities = 74/84 (88%), Gaps = 6/84 (7%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct: 84 gtactccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgc 31
Query: 68 tcttatattcctttacggagggag 91
||||||||| |||||| |||||||
Sbjct: 30 tcttatatttctttacagagggag 7
Score = 87.7 bits (44), Expect = 2e-17
Identities = 73/83 (87%), Gaps = 6/83 (7%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgct 58
Query: 69 cttatattcctttacggagggag 91
|||||||| |||||| |||||||
Sbjct: 59 cttatatttctttacagagggag 81
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaa 64
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaa 32
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||| ||||| |||| |||| |||||||||||||| |||||||||||||| |
Sbjct: 4 gtactccctccgtaaataaatgtaag--tgtttagatcactaaagtagtgatctaaacac 61
Query: 68 tcttatattcctttacggagggag 91
||||||||| |||||| |||||||
Sbjct: 62 tcttatatttctttacagagggag 85
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| ||
Sbjct: 4 gtactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgc 63
Query: 68 tcttatattcctttacggagggag 91
||||||||| ||||| |||||||
Sbjct: 64 tcttatattagtttactgagggag 87
Score = 75.8 bits (38), Expect = 9e-14
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 10 actccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctc 69
|||||||| ||||| |||||||||| ||||||||||||| | |||||||| ||| |||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 70 ttatattcctttacggagggag 91
||||||| |||||||||||||
Sbjct: 28 ttatattaatttacggagggag 7
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 53/56 (94%)
Strand = Plus / Minus
Query: 21 aaagaaatataagagtgtttagatcactatagtagtgatctaaatgctcttatatt 76
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 77 aaagaaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatt 22
Score = 65.9 bits (33), Expect = 9e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 15 ctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctcttata 74
||||||||| ||||||||||| ||||||||||||| |||||||||| | ||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcactactttagtgatctagacactcttata 70
Query: 75 ttcctttacggag 87
|| |||| |||||
Sbjct: 71 tttctttgcggag 83
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| |||||||||| |||| |||||||| | |||||||||||| |||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 69 cttatattcctttacggagg 88
|||||||| ||||||||||
Sbjct: 65 cttatattagtttacggagg 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 26 aatataagagtgtttagatcactatagtagtgatctaaatgctcttatattcctttacgg 85
|||||||||| |||||||||||||| |||||||| ||| ||||||||||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactattttagtgatccaaacgctcttatattaatttacag 13
Query: 86 agggag 91
||||||
Sbjct: 12 agggag 7
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||||||||| |||||||||| |||||||||||||| |||| |||||| ||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgc 63
Query: 68 tcttatattcctttacggagggag 91
||||||||| |||||||||||||
Sbjct: 64 tcttatattagtttacggagggag 87
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| |||||||||| ||||||| |||| | |||||||||||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 69 cttatattcctttacggagggag 91
|||||||| ||||| |||||||
Sbjct: 29 cttatattagtttacagagggag 7
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| |||||||||| | ||||||||||| ||||||||||||| |||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 69 cttatattcctttacggagggag 91
|||||||| ||||| |||||||
Sbjct: 29 cttatattagtttacagagggag 7
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| |||||||||| | ||||||||||| ||||||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 69 cttatattcctttacggagggag 91
|||||||| ||||| |||||||
Sbjct: 65 cttatattagtttacagagggag 87
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgct 64
Query: 69 cttatattcctttacggagggag 91
|||||||| ||||| |||||||
Sbjct: 65 cttatattagtttaccgagggag 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| |||||||||| |||| |||| || | |||||||||||| ||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 69 cttatattcctttacggagggag 91
|||||||| |||||||||||||
Sbjct: 29 cttatattagtttacggagggag 7
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| |||||||||| |||||||||||| | |||| ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 69 cttatattcctttacggagggag 91
|||||||| |||||||||||||
Sbjct: 65 cttatattagtttacggagggag 87
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| |||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 69 cttatattcctttacggagggag 91
|||||||| ||||| |||||||
Sbjct: 29 cttatattagtttacagagggag 7
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||||||||| ||||||||||| ||||||| |||| | ||||| |||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgc 63
Query: 68 tcttatattcctttacggaggga 90
||||||||| |||||| |||||
Sbjct: 64 tcttatattagtttacgaaggga 86
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
|||||| |||||||| | |||||||| ||||||||||||| |||||| ||||||| |||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgct 30
Query: 69 cttatattcctttacggagggag 91
|||||||| |||||||||||||
Sbjct: 29 cttatattaatttacggagggag 7
Score = 60.0 bits (30), Expect = 6e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| |||||||||| |||||||| |||| |||||||||||| |||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 69 cttata 74
||||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 83.8 bits (42), Expect = 4e-16
Identities = 77/89 (86%), Gaps = 6/89 (6%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcacta------tagtagtgatcta 62
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagtagtagtgatcta 64
Query: 63 aatgctcttatattcctttacggagggag 91
|||| ||||||||| |||| ||||||||
Sbjct: 65 aatgatcttatatttctttgtggagggag 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 53 tagtgatctaaatgctcttatattcctttacggagggag 91
|||||||||||| | ||||||||| |||||| |||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggag 7
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 83.8 bits (42), Expect = 4e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 26 aatataagagtgtttagatcactatagtagtgatctaaatgctcttatattcctttacgg 85
|||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatattagtttacgg 126
Query: 86 agggag 91
||||||
Sbjct: 127 agggag 132
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| |||||||||| ||||||||| || | |||||||||||| |||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 69 cttatatt 76
||||||||
Sbjct: 74 cttatatt 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttag 42
|||||||||||||||| |||||||||| ||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 83.8 bits (42), Expect = 4e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 14 cctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctcttat 73
|||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcacta-agtagtgatctaaatgctcttat 67
Query: 74 attcctttacggagggag 91
||| |||||||||||||
Sbjct: 68 attagtttacggagggag 85
Score = 56.0 bits (28), Expect = 9e-08
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcacta-cttagtgatctaaatgct 29
Query: 69 cttatatt 76
|||||||
Sbjct: 28 tttatatt 21
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Minus
Query: 19 gtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctcttatattcc 78
||||| ||||||||||| ||| |||||||| |||||||| ||||| ||||||||||| |
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 79 tttacggagggag 91
|||||||||||||
Sbjct: 19 tttacggagggag 7
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||||||||||||||| |||||| |||||| |||||||| || |||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 69 cttatatt 76
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||| ||||| |||||||||| |||||| |||||| | |||||||||||||||
Sbjct: 4 gtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgc 63
Query: 68 tcttatatt 76
|||||||||
Sbjct: 64 tcttatatt 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
|||| |||||||||| |||||||||| ||||||||||||| |||||| ||||| |||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 69 cttatattcctttacggagggag 91
|||||||| |||||||||||||
Sbjct: 29 cttatattagtttacggagggag 7
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| |||||||||| |||||||| |||| ||||||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 69 cttatatt 76
|||||||
Sbjct: 65 tttatatt 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||| ||||||| ||||||| || |||||| ||||| |||| ||||||| ||
Sbjct: 90 gtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgc 31
Query: 68 tcttatattcctttacggagggag 91
||||||||| ||||| |||||||
Sbjct: 30 tcttatattagtttacagagggag 7
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||||||||| ||||||||||||||||||| |||| | |||| |||||| ||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacgc 61
Query: 68 tcttatattcctttacggagggag 91
| ||||||| |||||||||||||
Sbjct: 62 tattatattagtttacggagggag 85
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 73.8 bits (37), Expect = 4e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaa 64
|||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 38 tttagatcactatagtagtgatctaaatgctcttatattcctttacggagggag 91
|||||||||||| |||||||||||| ||||||||||| ||||| |||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggag 7
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||||||||| ||||||| ||||||||||| |||| | |||| |||||| ||
Sbjct: 4 gtactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgc 61
Query: 68 tcttatattcctttacggagggag 91
||||||||| |||||||||||||
Sbjct: 62 tcttatattagtttacggagggag 85
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||||||||| ||||||| | |||||||||||| |||||| ||||||| |
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacac 31
Query: 68 tcttatattcctttacggagggag 91
||||||||| |||||||||||||
Sbjct: 30 tcttatattagtttacggagggag 7
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||| |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 69 cttatattcctttacggagggag 91
||||||| ||||| |||||||
Sbjct: 65 tttatattagtttacagagggag 87
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctctt 71
|||||||||||| ||||||||| |||||||||||| |||||||||||||| | ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 72 atattcctttacggagggag 91
||||| ||||| |||||||
Sbjct: 68 atattagtttacagagggag 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||||||||| ||||||||| |||||||||||| |||||||||||| |
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaagg 31
Query: 68 tcttatattcctttacggaggga 90
||||||||| ||||| ||||||
Sbjct: 30 tcttatattagtttacagaggga 8
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 69.9 bits (35), Expect = 6e-12
Identities = 70/81 (86%), Gaps = 3/81 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcacta---tagtagtgatctaaat 65
|||||| || ||||||||||| ||||| || |||||||||| |||||||||||||||
Sbjct: 92 tactccatccgtaaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaac 33
Query: 66 gctcttatattcctttacgga 86
| ||||||||| |||||||||
Sbjct: 32 gttcttatatttctttacgga 12
Score = 52.0 bits (26), Expect = 1e-06
Identities = 64/76 (84%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 19 gtaaagaaatataagagtgtttagatc---actatagtagtgatctaaatgctcttatat 75
|||||||||||||||| ||||||||| ||||| |||||||||| | |||||| |||
Sbjct: 15 gtaaagaaatataagaacgtttagatcactactattttagtgatctagacgctcttgtat 74
Query: 76 tcctttacggagggag 91
| ||||||||| ||||
Sbjct: 75 ttctttacggatggag 90
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| ||||||||| |||||||||||||| |||| |||||| |||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 69 cttatattcctttacggagggag 91
||||||| |||||||||||||
Sbjct: 29 tttatattagtttacggagggag 7
Score = 56.0 bits (28), Expect = 9e-08
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||| ||||| ||||||| || ||||||| |||| | |||||||||||| |
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgt 63
Query: 68 tcttatattcctttacggagggag 91
||||||||| ||||| |||||||
Sbjct: 64 tcttatattagtttacagagggag 87
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| ||||||| || ||||||||||||| || | |||||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 69 cttatattcctttacggagggag 91
|||||||| |||| ||||||||
Sbjct: 65 cttatattagtttatggagggag 87
Score = 56.0 bits (28), Expect = 9e-08
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
|||||||||| |||| |||||||||| ||||||| | || | |||||||||||||||
Sbjct: 90 gtactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgc 31
Query: 68 tcttatattcctttacggagggag 91
| ||||||| ||||| |||||||
Sbjct: 30 ttttatattagtttacagagggag 7
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcacta 49
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagatcacta 45
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||||||||| ||||||| ||| |||| || |||| | |||||||||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 69 cttatattcctttacggagggag 91
|||||||| ||||| |||||||
Sbjct: 29 cttatattagtttacagagggag 7
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 26 aatataagagtgtttagatcactatagtagtgatctaaatgctcttatattcctttacgg 85
||||||| || |||||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct: 22 aatataaaagcgtttagatcatta-agtagtgatctaaatgctcttatattagtttacag 80
Query: 86 agggag 91
||||||
Sbjct: 81 agggag 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcacta 49
|||||||||||||||| |||||||||| ||||||||||||
Sbjct: 89 gtactccctctgtaaactaatataagagcatttagatcacta 48
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 65.9 bits (33), Expect = 9e-11
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcacta---tagtagtgatctaaat 65
|||||||| |||||| |||||||||| ||||||||||||| |||||||||||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcactagagtagtagtgatctaaac 33
Query: 66 gctcttatatt 76
||||| |||||
Sbjct: 32 gctctcatatt 22
Score = 56.0 bits (28), Expect = 9e-08
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcacta-ta--gtagtgatctaaat 65
|||||||||||| || |||||| |||| ||||||||||||| || ||||||||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcactactactctagtgatctaaac 64
Query: 66 gctcttatatt 76
|||||||||||
Sbjct: 65 gctcttatatt 75
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatataagagtgtttagatcacta--tagtagtgatctaaatgctc 69
|||||||||||| ||||||||| |||||||||||| ||||||||||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 70 ttatattcctttacggagggag 91
||||||| ||||| |||||||
Sbjct: 68 ttatattagtttacagagggag 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcacta-ta-gtagtgatctaaat 65
|||||||||||||||| ||||||||| |||||||||||| || ||||||||||||
Sbjct: 92 gtactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaa 33
Query: 66 gctcttatattcctttacggaggga 90
| ||||||||| ||||| ||||||
Sbjct: 32 ggtcttatattagtttacagaggga 8
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 53 tagtgatctaaatgctcttatattcctttacggagggagaata 95
|||||||||||||| ||||||||| |||||| |||||||||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggagaata 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 11 ctccctctgtaaagaaatataagagtgtttagatcactata 51
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcactata 36
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| ||||| ||||||||| ||||||| ||| ||||||| ||||||||||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 69 cttatattcctttacggagggag 91
|||||||| |||| ||||||||
Sbjct: 65 cttatattagtttatggagggag 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgct 68
||||||||| |||| |||||||||| |||||| ||||| ||| ||||||||| |
Sbjct: 89 tactccctccataaactaatataagagcatttagaacactacttcagtaatctaaatgtt 30
Query: 69 cttatattcctttacggagggag 91
|||||||| |||||||||||||
Sbjct: 29 cttatattagtttacggagggag 7
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctctt 71
|||||| ||||| |||||||||| ||||||| |||| |||| ||||||||||||| ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 72 atatt 76
|||||
Sbjct: 68 atatt 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgc 67
||||||||| |||||| ||||||| || ||||||||| || |||| |||||| ||
Sbjct: 90 gtactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgc 31
Query: 68 tcttatattcctttacggaggga 90
||||||||| ||||||||||||
Sbjct: 30 tcttatattagtttacggaggga 8
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 12 tccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctctt 71
||||| |||||| |||||||||| ||| |||||| || | | |||||||||| |||||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 72 atattcctttacggagggag 91
||||| |||||||||||||
Sbjct: 68 atattagtttacggagggag 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 10 actccctctgtaaagaaatataagagtgtttagatcactatagtagtgatctaaatgctc 69
|||||||| ||||| |||||||||| ||||||||||| || || |||||| || ||||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 70 ttatatt 76
|||||||
Sbjct: 28 ttatatt 22
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 44 tcactatagtagtgatctaaatgctcttatattcctttacggaggg 89
||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 54 tcactattttagtgatctaaatgctcttatattagtttacagaggg 9
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagtgtttagatcactatagtagtga 58
||||||||||| |||||||||| |||||||||||| | ||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaaaatagtga 54
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagtgttt 40
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Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
