miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 129 bits (65), Expect = 7e-30
Identities = 74/77 (96%)
Strand = Plus / Minus
Query: 7 tatacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacg 66
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct: 91 tatacaccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacg 32
Query: 67 ctcttatatttctttac 83
|||||||||||||||||
Sbjct: 31 ctcttatatttctttac 15
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 14 cctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctcttat 73
||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 10 cctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgctcttat 69
Query: 74 atttctttac 83
||||||||||
Sbjct: 70 atttctttac 79
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgc 67
|||| ||||||||||| |||||||||||||| |||||||||||||||||||||| | ||
Sbjct: 4 atactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgc 63
Query: 68 tcttatatttctttacggagagagta 93
|||||||||||||||||||| |||||
Sbjct: 64 tcttatatttctttacggagggagta 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct: 85 ccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgctctta 26
Query: 73 tatttctttacggagagagta 93
|||| ||||| ||| |||||
Sbjct: 25 tattagtttacagagggagta 5
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
|||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct: 85 ccctctataaagaaatataagagcatttagataactactttagtgctctaaacgctctta 26
Query: 73 tatttctttacggagagagtac 94
||||||||||| ||| ||||||
Sbjct: 25 tatttctttaccgagggagtac 4
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| |||||||||||||||||| |||||| ||||| |||| ||||| | |||||||
Sbjct: 9 ccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgctctta 68
Query: 73 tatttctttacggagagagtacata 97
|||||||||| ||| |||||||||
Sbjct: 69 tatttctttatagagggagtacata 93
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 111 bits (56), Expect = 2e-24
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
|||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||
Sbjct: 85 ccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacattctta 26
Query: 73 tatttctttacggagagagtacat 96
||||||| ||||||| ||||||||
Sbjct: 25 tatttctgtacggagggagtacat 2
Score = 50.1 bits (25), Expect = 5e-06
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||| |||||||||||| |||||||||||| |||| ||||| | | |||||
Sbjct: 9 ccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatgatctta 68
Query: 73 tatttctttacggagagagta 93
||||||||||| ||| |||||
Sbjct: 69 tatttctttacagagggagta 89
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 109 bits (55), Expect = 7e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 15 ctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctcttata 74
||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcactactttagtgatctagacactcttata 70
Query: 75 tttctttacggagagagta 93
||||||| ||||| |||||
Sbjct: 71 tttctttgcggagtgagta 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 21 aaagaaatataagagcatttagatcactactttagtgatctacacgctcttatatttctt 80
||||||||||||||| | |||||||||| |||||||||| |||||||||||||| ||
Sbjct: 77 aaagaaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgtt 18
Query: 81 tac 83
|||
Sbjct: 17 tac 15
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct: 85 ccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgctctta 26
Query: 73 tatttctttac 83
|||||||||||
Sbjct: 25 tatttctttac 15
Score = 83.8 bits (42), Expect = 4e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 16 tctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctcttatat 75
||||||||||||||||||||| | |||||||||| |||| ||||| || |||||||||
Sbjct: 12 tctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacactcttatat 71
Query: 76 ttctttacggagagagta 93
|||||||||||| |||||
Sbjct: 72 ttctttacggagggagta 89
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 14 cctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctcttat 73
|||||||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct: 84 cctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgctcttat 25
Query: 74 atttctttacggagagagtac 94
||| ||||||||| ||||||
Sbjct: 24 attagtttacggagggagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| ||||||||||| ||||| |||||| |||||||||| | |||||||
Sbjct: 9 ccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgctctta 68
Query: 73 tatt 76
||||
Sbjct: 69 tatt 72
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 91.7 bits (46), Expect = 2e-18
Identities = 78/89 (87%), Gaps = 6/89 (6%)
Strand = Plus / Plus
Query: 6 atatacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacac 65
|||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct: 2 atatactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaac 55
Query: 66 gctcttatatttctttacggagagagtac 94
|||||||||||||||||| ||| ||||||
Sbjct: 56 gctcttatatttctttacagagggagtac 84
Score = 83.8 bits (42), Expect = 4e-16
Identities = 71/81 (87%), Gaps = 6/81 (7%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
|||||||||||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct: 79 ccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgctctta 26
Query: 73 tatttctttacggagagagta 93
||||||||||| ||| |||||
Sbjct: 25 tatttctttacagagggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| |||||||||||||||||| |||||||||||| ||||| |||||| |||| ||||
Sbjct: 85 ccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctta 26
Query: 73 tatttctttacggagagagtac 94
||||| ||||| ||| ||||||
Sbjct: 25 tatttgtttacagagggagtac 4
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||||| || |||||||| ||| |||||||||| |||||||||
Sbjct: 9 ccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgctctta 68
Query: 73 tatttctttac 83
|||||||||||
Sbjct: 69 tatttctttac 79
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 87.7 bits (44), Expect = 2e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgc 67
|||| ||||| |||||||||||||||||| ||||| ||||||||| |||||||| ||||
Sbjct: 4 atactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgc 63
Query: 68 tcttatatttctttac 83
|||||||||| |||||
Sbjct: 64 tcttatatttgtttac 79
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 19 gtaaagaaatataagagcatttagatcactactttagtgatctacacgctcttatatttc 78
||||| |||||||||||| || |||||||| |||||| ||| |||||||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 79 tttacggagagagta 93
||||||||| |||||
Sbjct: 19 tttacggagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 26 aatataagagcatttagatcactactttagtgatctacacgctcttatatttctttacgg 85
||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacag 13
Query: 86 agagagta 93
|| |||||
Sbjct: 12 agggagta 5
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgc 67
|||| ||||||||||| ||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 4 atactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgc 63
Query: 68 tcttatatt 76
|||||||||
Sbjct: 64 tcttatatt 72
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||
Sbjct: 83 ccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaa--cactta 26
Query: 73 tatttctttacggagagagtac 94
|||| ||||||||| ||||||
Sbjct: 25 catttatttacggagggagtac 4
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 38 tttagatcactactttagtgatctacacgctcttatatttctttacggagagagtac 94
|||||||||||| |||||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 32 tttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagtac 88
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgc 67
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct: 4 atactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgc 63
Query: 68 tcttatatttctttacggagagagta 93
||||||||| ||||| ||| |||||
Sbjct: 64 tcttatattagtttacagagggagta 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 85 ccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgctctta 26
Query: 73 tatttctttacggagagagta 93
|||| ||||| ||| |||||
Sbjct: 25 tattagtttacagagggagta 5
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 81.8 bits (41), Expect = 2e-15
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 19 gtaaagaaatataagagcatttagatcactact---ttagtgatctacacgctcttatat 75
|||||||||||||||| | |||||||||||||| ||||||||||| |||||||| |||
Sbjct: 15 gtaaagaaatataagaacgtttagatcactactattttagtgatctagacgctcttgtat 74
Query: 76 ttctttacgga 86
|||||||||||
Sbjct: 75 ttctttacgga 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 53 tagtgatctacacgctcttatatttctttacggagagagta 93
|||||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 45 tagtgatctaaacgttcttatatttctttacggatagagta 5
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgctctta 68
Query: 73 tatttctttacggagagagta 93
|||| ||||||||| |||||
Sbjct: 69 tattagtttacggagggagta 89
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| ||||||||||| ||||||| |||| |||||||||||| | |||||||
Sbjct: 85 ccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctctta 26
Query: 73 tatttctttacggagagagta 93
|||| ||||| ||| |||||
Sbjct: 25 tattagtttacagagggagta 5
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||
Sbjct: 9 ccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgctctta 68
Query: 73 tatttctttacggagagagta 93
|||| ||||||||| |||||
Sbjct: 69 tattagtttacggagggagta 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| ||||||||||| |||||| |||| |||||||||| |||||||||
Sbjct: 85 ccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctctta 26
Query: 73 tatttctttacggagagagtac 94
|||| ||||| ||| ||||||
Sbjct: 25 tattagtttacagagggagtac 4
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgc 67
|||| ||||| ||||| ||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct: 4 atactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgc 63
Query: 68 tcttata 74
|||||||
Sbjct: 64 tcttata 70
Score = 60.0 bits (30), Expect = 6e-09
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 28 tataagagcatttagatcactactttagtgatctacacgctcttatatttctttacggag 87
||||||||| |||||||||||| |||| ||||| ||||||||||||| |||||||||
Sbjct: 70 tataagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggag 11
Query: 88 agagta 93
|||||
Sbjct: 10 ggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 17 ctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctcttatatt 76
||||||| ||||||| |||||||||| |||||||||||| ||||| |||||||||||||
Sbjct: 81 ctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgctcttatatt 22
Query: 77 tctttacggagagagta 93
||||| ||| |||||
Sbjct: 21 agtttacagagggagta 5
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 9 tacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgct 68
|||| |||| ||||| ||||||||||| |||||||||||| |||||||||| | |||||
Sbjct: 89 tacaacctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgct 30
Query: 69 cttatatttctttacggagagagta 93
|||||||| ||||| ||| |||||
Sbjct: 29 cttatattaatttacagagggagta 5
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||||||| ||| |||||||| |||||||||| |||||||||
Sbjct: 9 ccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgctctta 68
Query: 73 tatttctttacggag 87
|||| |||||||||
Sbjct: 69 tattagtttacggag 83
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||||| | ||||||||||||||||||||||||| | | |||||
Sbjct: 85 ccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtctta 26
Query: 73 tatt 76
||||
Sbjct: 25 tatt 22
Score = 54.0 bits (27), Expect = 3e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||||| | |||||||||||| |||||||||| | | |||||
Sbjct: 9 ccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctta 68
Query: 73 tatttctttacggagagagtaca 95
|||| ||||| ||| |||||||
Sbjct: 69 tattagtttacagagggagtaca 91
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 68/79 (86%), Gaps = 6/79 (7%)
Strand = Plus / Minus
Query: 21 aaagaaatataagagcatttagatcactact------ttagtgatctacacgctcttata 74
|||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 83 aaagaaatataagatcatttagatcactactactattttagtgatctaaacgatcttata 24
Query: 75 tttctttacggagagagta 93
||||||||| ||| |||||
Sbjct: 23 tttctttacagagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatcacta 49
|||| |||||||||||||||||||||| | ||||||||||||
Sbjct: 4 atactccctctgtaaagaaatataagatcgtttagatcacta 45
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||| |||
Sbjct: 84 ccctctgtaaactaatataagagcatttagatcactac-ttaatgatctaaacgctttta 26
Query: 73 tatt 76
||||
Sbjct: 25 tatt 22
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 26 aatataagagcatttagatcactactttagtgatctacacgctcttatatttctttacgg 85
||||||||||| |||||||||||| |||| ||||||| | ||||||||||| |||||||
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatattagtttacgg 126
Query: 86 agagagta 93
|| |||||
Sbjct: 127 agggagta 134
Score = 65.9 bits (33), Expect = 9e-11
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgc 67
|||| ||||| ||||| ||||||||||||||||||||| || |||||||||| ||||
Sbjct: 135 atactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgc 76
Query: 68 tcttatatt 76
|||||||||
Sbjct: 75 tcttatatt 67
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
|||| |||||| ||||||| ||||||||||||| ||||||||| |||| |||||||||
Sbjct: 85 ccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgctctta 26
Query: 73 tatttctttacggag 87
|||| |||||||||
Sbjct: 25 tattagtttacggag 11
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgc 67
|||| ||||||||||| ||||||| |||||||||||||||| |||| | ||||| | ||
Sbjct: 4 atactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgc 63
Query: 68 tcttatatttctttacggagagagtac 94
||||||||| |||| |||| ||||||
Sbjct: 64 tcttatattagtttatggagggagtac 90
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||||| | |||||||||||| |||||| |||| ||||| |||
Sbjct: 85 ccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgctttta 26
Query: 73 tatttctttacggagagagtac 94
|||| ||||||||| ||||||
Sbjct: 25 tattagtttacggagggagtac 4
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 65.9 bits (33), Expect = 9e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 38 tttagatcactactttagtgatctacacgctcttatatttctttacggagagagtac 94
||||||||||||||||||||||||| | ||||||||||| ||||| ||| ||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagtac 4
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatcta 62
||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct: 9 ccctctgtaaactaatataagagcttttagatcactaaagtagtgatcta 58
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcacta 49
|||||||||||||||||||||| ||||||||||||||
Sbjct: 74 ccctctgtaaagaaatataagatcatttagatcacta 38
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataaga 34
|||| ||||||||||||||||||||||
Sbjct: 4 atactccctctgtaaagaaatataaga 30
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| |||||||||| ||| |||||||| |||||||||||| |||||||||
Sbjct: 9 ccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgctctta 68
Query: 73 tatt 76
||||
Sbjct: 69 tatt 72
Score = 60.0 bits (30), Expect = 6e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| ||||||||||| |||||||||||| |||||||| | || ||||||
Sbjct: 85 ccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactctta 26
Query: 73 tatttctttacggagagagtac 94
|||| ||||||||| ||||||
Sbjct: 25 tattaatttacggagggagtac 4
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| ||||||||||| |||||| ||||| |||||||||||| || ||||||
Sbjct: 85 ccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacactctta 26
Query: 73 tatt 76
||||
Sbjct: 25 tatt 22
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
|||||| |||| |||||||||| |||||||||||| ||||| |||| |||||||||
Sbjct: 9 ccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgctctta 68
Query: 73 tatttctttacggagagagta 93
|||| ||||||||| |||||
Sbjct: 69 tattagtttacggagggagta 89
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 26 aatataagagcatttagatcactactttagtgatctacacgctcttatatttctttacgg 85
|||||||||||||||||| |||||||| ||| ||||| | | ||||||||| |||||||
Sbjct: 72 aatataagagcatttagaacactacttcagtaatctaaatgttcttatattagtttacgg 13
Query: 86 agagagta 93
|| |||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 26 aatataagagcatttagatcactactttagtgatctacacgctcttatatttctttacgg 85
|||||||||||||||||| ||||| |||||| ||||| | |||||||||| ||||| |
Sbjct: 72 aatataagagcatttagaacactattttagtaatctaaatactcttatattagtttacag 13
Query: 86 agagagtacata 97
|| |||||||||
Sbjct: 12 agggagtacata 1
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| |||||||||| |||||||| |||| ||||| |||| | |||||||
Sbjct: 9 ccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgctctta 68
Query: 73 tatt 76
||||
Sbjct: 69 tatt 72
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 14 cctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctcttat 73
|||||||||| ||||||| |||||||||||||||| |||||||||| | ||||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcacta-agtagtgatctaaatgctcttat 67
Query: 74 atttctttacggagagagta 93
||| ||||||||| |||||
Sbjct: 68 attagtttacggagggagta 87
Score = 63.9 bits (32), Expect = 4e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| ||||||||||||||||||||||||| ||||||||||| | ||| |||
Sbjct: 83 ccctccgtaaactaatataagagcatttagatcactac-ttagtgatctaaatgctttta 25
Query: 73 tatt 76
||||
Sbjct: 24 tatt 21
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 60.0 bits (30), Expect = 6e-09
Identities = 62/72 (86%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 8 atacaccctctgtaaagaaatataagagcatttagatc---actactttagtgatctaca 64
|||| |||||||| || |||||| ||||| |||||||| |||||| |||||||||| |
Sbjct: 4 atactccctctgtgaataaatatgagagcgtttagatcactactactctagtgatctaaa 63
Query: 65 cgctcttatatt 76
||||||||||||
Sbjct: 64 cgctcttatatt 75
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| |||||||||||||||| |||| || |||||||||| || ||||||
Sbjct: 85 ccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacactctta 26
Query: 73 tatttctttacggagagagta 93
|||| ||||||||| |||||
Sbjct: 25 tattagtttacggagggagta 5
Score = 50.1 bits (25), Expect = 5e-06
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| |||||||||| |||||||||||| |||| |||| || | |||||||
Sbjct: 9 ccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgctctta 68
Query: 73 tatttctttacggagagagta 93
|||| ||||| ||| |||||
Sbjct: 69 tattagtttaccgagggagta 89
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||||||||| ||||||| | |||||||||||||| |||| ||||| || ||||||
Sbjct: 85 ccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacactctta 26
Query: 73 tatttctttacggagagagta 93
|||| ||||||||| |||||
Sbjct: 25 tattagtttacggagggagta 5
Score = 54.0 bits (27), Expect = 3e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| |||||||||| ||||||| ||||||||||||||||| | | | |||
Sbjct: 9 ccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgttttta 68
Query: 73 tatttctttacggagagagtaca 95
|||| ||||| ||| |||||||
Sbjct: 69 tattagtttacagagggagtaca 91
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcacta 49
||||||||||| ||||||||||||||||||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcacta 45
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactact--ttagtgatctacacgctct 70
||||||||||| ||||||||| | |||||||||||||| ||||||||||| | | |||
Sbjct: 87 ccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaaggtct 28
Query: 71 tatatt 76
||||||
Sbjct: 27 tatatt 22
Score = 44.1 bits (22), Expect = 3e-04
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactt--tagtgatctacacgctct 70
||||||||||| ||||||||| | |||||||||||| | |||||||||| | | |||
Sbjct: 9 ccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtct 68
Query: 71 tatatttctttacggagagagtaca 95
|||||| ||||| ||| |||||||
Sbjct: 69 tatattagtttacagagggagtaca 93
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagt 56
||||||||||| |||||||||| |||||||||||| ||||||
Sbjct: 9 ccctctgtaaactaatataagagtgtttagatcactagtttagt 52
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcatttagatcactactttagtgatctacacgctctta 72
||||| ||||| |||||||||| |||||||||| | |||| |||||| |||||||||
Sbjct: 85 ccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctctta 26
Query: 73 tatt 76
||||
Sbjct: 25 tatt 22
