miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||||||||||||||||
Sbjct: 54 cctactgaagtgtttgggggaactcccggtgtcat 88
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||||||| ||||||||
Sbjct: 68 cctactgaagtgtttgggggaactcctggtgtcat 102
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||||||| ||||||||
Sbjct: 69 cctactgaagtgtttgggggaactcctggtgtcat 103
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 31 gtgtcccctagagttcccttgaacgcttcactggg 65
|||||||||||||||||||||||| ||||||||||
Sbjct: 1 gtgtcccctagagttcccttgaacacttcactggg 35
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 93 actgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||| ||||||||
Sbjct: 55 actgaagtgtttgggggaactcttggtgtcat 86
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||||||| ||||||||
Sbjct: 60 cctactgaagtgtttgggggaactcctggtgtcat 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 32 tgtcccctagagttcccttgaacgcttcactggg 65
||||||||||||||||||||| | ||||||||||
Sbjct: 2 tgtcccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||||||| ||||||||
Sbjct: 54 cctactgaagtgtttgggggaactcctggtgtcat 88
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||||||| ||||||||
Sbjct: 54 cctactgaagtgtttgggggaactcctggtgtcat 88
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 60.0 bits (30), Expect = 9e-09
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 31 gtgtcccctagagttcccttgaacgcttcactggggattctctttaaacaagaggtatac 90
|||||||||||||||||||||| | |||||||||||| ||| ||| | | | | |
Sbjct: 1 gtgtcccctagagttcccttgaccacttcactggggaccttctctaattataatgacttc 60
Query: 91 ctactgaagtgtttgggggaactcccggtg 120
||||||||||||||||||||||||| ||||
Sbjct: 61 ctactgaagtgtttgggggaactcctggtg 90
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 93 actgaagtgtttgggggaactcccggtgtcat 124
||||||||||||||||||||||||| ||||||
Sbjct: 69 actgaagtgtttgggggaactcccgatgtcat 100
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana (thale
cress)
Length = 95
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 ctactgaagtgtttgggggaactcccgg 118
||||||||||||||||||||||||||||
Sbjct: 62 ctactgaagtgtttgggggaactcccgg 89
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 93 actgaagtgtttgggggaactcccggtgtcat 124
||||||||||||||||||||||| ||||||||
Sbjct: 68 actgaagtgtttgggggaactcctggtgtcat 99
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 31 gtgtcccctagagttcccttgaacgcttcactggg 65
|||||||||||||||||||||| | ||||||||||
Sbjct: 1 gtgtcccctagagttcccttgagcacttcactggg 35
>RF00451;mir-395;ABIM01010538.1/2937-3031 3649:Carica papaya
(papaya)
Length = 95
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 94 ctgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||| ||||||||
Sbjct: 65 ctgaagtgtttgggggaactccgggtgtcat 95
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 93 actgaagtgtttgggggaactcccggtgtca 123
||||||||||||||||||||||| |||||||
Sbjct: 68 actgaagtgtttgggggaactcctggtgtca 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 31 gtgtcccctagagttcccttgaacgcttcactggggatt 69
|||||||||||||||||||||| | ||||| || |||||
Sbjct: 1 gtgtcccctagagttcccttgaccacttcattgtggatt 39
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 92 tactgaagtgtttgggggaactcccgg 118
|||||||||||||||||||||||||||
Sbjct: 59 tactgaagtgtttgggggaactcccgg 85
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 54.0 bits (27), Expect = 6e-07
Identities = 75/90 (83%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 31 gtgtcccctagagttcccttgaacgcttcactggggattctctttaaacaagaggtatac 90
|||||||||||||||||| ||| | ||||||||||||| ||| ||| | | | |||
Sbjct: 1 gtgtcccctagagttcccctgaccacttcactggggatcttctctaatga--atgcctac 58
Query: 91 ctactgaagtgtttgggggaactcccggtg 120
|||||||||||||||||||||||| ||||
Sbjct: 59 gtactgaagtgtttgggggaactcctggtg 88
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana (thale
cress)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 actgaagtgtttgggggaactcccgg 118
||||||||||||||||||||||||||
Sbjct: 62 actgaagtgtttgggggaactcccgg 87
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactcc 115
||||||||||||||||||||||||||
Sbjct: 60 cctactgaagtgtttgggggaactcc 85
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 31 gtgtcccctagagttcccttgaacgcttcactgggga 67
|||||||||||||||||||||| | ||||||| ||||
Sbjct: 1 gtgtcccctagagttcccttgatcacttcactaggga 37
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactc 114
|||||||||||||||||||||||||
Sbjct: 75 cctactgaagtgtttgggggaactc 99
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 ctactgaagtgtttgggggaactcc 115
|||||||||||||||||||||||||
Sbjct: 58 ctactgaagtgtttgggggaactcc 82
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 gtgtcccctagagttcccttgaacgcttca 60
|||| ||||||||||||||||| |||||||
Sbjct: 1 gtgttccctagagttcccttgaccgcttca 30
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 94 ctgaagtgtttgggggaactcccgg 118
|||||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcccgg 88
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 93 actgaagtgtttgggggaactcccggtgtcat 124
|||||||||||||||||||||| ||||||||
Sbjct: 48 actgaagtgtttgggggaactcttggtgtcat 79
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 tgaagtgtttgggggaactcccggtgtc 122
|||||||||||||||||||| |||||||
Sbjct: 57 tgaagtgtttgggggaactctcggtgtc 84
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tactgaagtgtttgggggaactc 114
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 tactgaagtgtttgggggaactc 114
|||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactc 80
>RF00451;mir-395;CAAP02000483.1/95690-95777 29760:Vitis vinifera
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 90 cctactgaagtgtttgggggaactcccggtgtcat 124
||||||||||||||| ||| |||||||||||||||
Sbjct: 55 cctactgaagtgttt-gggaaactcccggtgtcat 88
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 actgaagtgtttgggggaactc 114
||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactc 69
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 actgaagtgtttgggggaactc 114
||||||||||||||||||||||
Sbjct: 83 actgaagtgtttgggggaactc 104
>RF00451;mir-395;FJ623755.1/264-353 28526:Solanum pennellii
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ctgaagtgtttgggggaactcc 115
||||||||||||||||||||||
Sbjct: 60 ctgaagtgtttgggggaactcc 81
>RF00451;mir-395;AC194694.1/91207-91297 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ctgaagtgtttgggggaactcc 115
||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactcc 82
>RF00451;mir-395;AC145120.1/105997-105904 50514:Solanum demissum
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ctgaagtgtttgggggaactcc 115
||||||||||||||||||||||
Sbjct: 64 ctgaagtgtttgggggaactcc 85
>RF00451;mir-395;AC145120.1/109390-109296 50514:Solanum demissum
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 gtgtcccctagagttcccttgaacgcttca 60
|||| ||||||||||||||||| |||||||
Sbjct: 1 gtgttccctagagttcccttgaccgcttca 30
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ctgaagtgtttgggggaactcc 115
||||||||||||||||||||||
Sbjct: 65 ctgaagtgtttgggggaactcc 86
>RF00451;mir-395;AF402959.1/7545-7457 4530:Oryza sativa (rice)
Length = 89
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 tgaagtgtttgggggaactcccggtgtcat 124
|||||||||||| ||||||| |||||||||
Sbjct: 60 tgaagtgtttggaggaactctcggtgtcat 89
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 95 tgaagtgtttgggggaactcccggtg 120
|||||||||||||||||||| |||||
Sbjct: 83 tgaagtgtttgggggaactctcggtg 108
