miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 184 bits (93), Expect = 2e-46
Identities = 120/129 (93%)
Strand = Plus / Plus
Query: 10 gtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatc 69
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 4 gtactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtc 63
Query: 70 acattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgg 129
|| |||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||
Sbjct: 64 acgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttggaacgg 123
Query: 130 agggagtat 138
||| |||||
Sbjct: 124 aggaagtat 132
Score = 83.8 bits (42), Expect = 6e-16
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 84 gatacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 58 gatacatccgtatttagacaaatctaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 168 bits (85), Expect = 1e-41
Identities = 118/129 (91%)
Strand = Plus / Plus
Query: 9 agtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaat 68
||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||| |
Sbjct: 3 agtactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatcaagt 62
Query: 69 cacattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacg 128
|||||||| |||||||||||||| |||||||||||||||||||| ||||| ||| ||||
Sbjct: 63 cacattttcgtattagatacatctgtatctagacaaatctaagacaagaaatttgggaca 122
Query: 129 gagggagta 137
|||||||||
Sbjct: 123 gagggagta 131
Score = 85.7 bits (43), Expect = 2e-16
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
||||||||| |||| ||| ||||||||||||||||||||| |||| ||| |||| |||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatctaatac 72
Query: 71 cattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgga 130
| | | | ||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct: 71 gaaaatgtgacttgatacatccgtatctagacaaatctaagacaagaattttgggaccga 12
Query: 131 gggagta 137
|||||||
Sbjct: 11 gggagta 5
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 167 bits (84), Expect = 5e-41
Identities = 117/128 (91%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||||| || |||| |||||||||||||||||||| |||||||| |||| |||||| |||
Sbjct: 5 tactccttctgtcccaaaattcttgtcttagatttttctaaatagggatgtatcaactca 64
Query: 71 cattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgga 130
| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct: 65 cgttttagtattagatacatccatatctagacaaatctaagacaagaattttgggacgga 124
Query: 131 gggagtat 138
||||||||
Sbjct: 125 gggagtat 132
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatc 64
|||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatc 78
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 155 bits (78), Expect = 2e-37
Identities = 117/130 (90%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtatgaagtca 72
Query: 71 cattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgga 130
|||||||||||| |||||| |||||||||||||| ||||| ||||||||| ||||||
Sbjct: 71 tattttagtattaaatacatatgtatctagacaaatgtaagacaagaattttgagacgga 12
Query: 131 gggagtatgt 140
||||||||||
Sbjct: 11 gggagtatgt 2
Score = 73.8 bits (37), Expect = 6e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 85 atacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
|||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 79 atacatccgtatttagacaaatctaagacaagaattttgggatggagggagta 131
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 147 bits (74), Expect = 5e-35
Identities = 116/130 (89%)
Strand = Plus / Plus
Query: 8 tagtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaa 67
|||||||| ||||||||| |||||||||||||| ||||||||||| ||| || ||||||
Sbjct: 2 tagtactcgctccgtcctgaaattcttgtcttaaatttgtctaaagacgaatgtatcaag 61
Query: 68 tcacattttagtattagatacatccgtatctagacaaatctaagataagaattttaggac 127
|||| |||| |||||||||||||||||||||||||||| ||| | ||||||||| ||||
Sbjct: 62 tcacgtttttgtattagatacatccgtatctagacaaagctacaacaagaattttgggac 121
Query: 128 ggagggagta 137
||||||||||
Sbjct: 122 ggagggagta 131
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 10 gtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatc 64
||||||||||||||| ||||||||||| ||| |||||||| |||||||| ||||
Sbjct: 132 gtactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatc 78
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 137 bits (69), Expect = 5e-32
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||||||||||||| |||||||||||| ||||||||||||||||||||| |||| | |||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagtca 64
Query: 71 cattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgga 130
||||||| ||||| |||| | |||||| |||||||||||| |||||||| |||||||
Sbjct: 65 tgttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggacgga 124
Query: 131 gggagtat 138
||||||||
Sbjct: 125 gggagtat 132
Score = 81.8 bits (41), Expect = 2e-15
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggacggagggagtat 138
||||||||||||||| |||||||||||| || ||||||||| |||||||||||||||
Sbjct: 60 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagtat 4
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 129 bits (65), Expect = 1e-29
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 10 gtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatc 69
|||| |||||||||| ||||||||||||||| |||||||||||||||||| |||| | |
Sbjct: 132 gtaccccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatctagtt 73
Query: 70 acattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgg 129
|||||||||| ||||||||||| |||||| |||||| ||||| ||||||||| ||| ||
Sbjct: 72 acattttagtgttagatacatctttatctaaacaaatgtaagacaagaattttgggatgg 13
Query: 130 aggga 134
|||||
Sbjct: 12 aggga 8
Score = 71.9 bits (36), Expect = 2e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggacggaggg 133
||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttgggacggaggg 127
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 129 bits (65), Expect = 1e-29
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 10 gtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatc 69
||||||||||||||| |||||| |||||||| ||||||||||||| |||| ||| | |
Sbjct: 4 gtactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtt 63
Query: 70 acattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgg 129
|||||||||| ||||||||||||||||||| |||||| ||||| ||||||||| ||| ||
Sbjct: 64 acattttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttgggatgg 123
Query: 130 aggga 134
|||||
Sbjct: 124 aggga 128
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 85 atacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
|||||||| ||| ||||||||| ||||| || |||||| ||||||||||||||
Sbjct: 57 atacatccatatttagacaaatttaagacaacaattttgggacggagggagta 5
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 8 tagtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatc 64
||||| ||||||| ||| ||||||||||||||| |||||| || |||||||| ||||
Sbjct: 134 tagtattccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatc 78
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 109 bits (55), Expect = 1e-23
Identities = 109/127 (85%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||||||||| || |||||||| |||||| |||| |||||||| |||| |||| | |||
Sbjct: 5 tactccctccatctcaaaattctggtcttaaatttctctaaatatggatgtatctagtca 64
Query: 71 cattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgga 130
| ||||||| ||||||||||||||||||||| ||||| ||| ||||||||| |||||||
Sbjct: 65 cgttttagtgttagatacatccgtatctagataaatcctagacaagaattttgggacgga 124
Query: 131 gggagta 137
|| ||||
Sbjct: 125 ggtagta 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatc 64
|||| ||||||||| ||||||||||||| ||||| |||| |||||||| ||||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatc 78
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 105 bits (53), Expect = 2e-22
Identities = 111/129 (86%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||||||||||| | |||||||||||||||||||||| || ||| | || |||| | | |
Sbjct: 5 tactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtta 64
Query: 71 cattttagtatt-agatacatccgtatctagacaaatctaagataagaattttaggacgg 129
|||||||||| ||||||||| | |||||||||| |||||| ||||||||||||||||
Sbjct: 65 agttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacgg 124
Query: 130 agggagtat 138
|||||||||
Sbjct: 125 agggagtat 133
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtcta 50
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 132 tactccctccgtcctaaaattcttgtcttagctttgtcta 93
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 97.6 bits (49), Expect = 4e-20
Identities = 110/129 (85%), Gaps = 1/129 (0%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||| ||||||| | |||||||||||||||||||||| || ||| | || |||| | | |
Sbjct: 132 tactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtta 73
Query: 71 cattttagtatt-agatacatccgtatctagacaaatctaagataagaattttaggacgg 129
|||||||||| ||||||||| | |||||||||| |||||| ||||||||||||||||
Sbjct: 72 agttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacgg 13
Query: 130 agggagtat 138
|||||||||
Sbjct: 12 agggagtat 4
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtcta 50
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagctttgtcta 44
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 95.6 bits (48), Expect = 2e-19
Identities = 109/128 (85%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||||||||||||| ||||||||||||||| ||||||||| ||| | || |||| | |||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctagtca 64
Query: 71 cattttagta-ttagatacatccgtatctagacaaatctaagataagaattttaggacgg 129
| |||||||| || |||||||| | |||| ||||| ||||| ||||||||| ||||||
Sbjct: 65 cgttttagtattttgatacatctatttctaaacaaacttaagacaagaattttgggacgg 124
Query: 130 agggagta 137
||||||||
Sbjct: 125 agggagta 132
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
||||||||| | ||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 60 tagatacattcatatctagacaaatgtaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 91.7 bits (46), Expect = 2e-18
Identities = 102/118 (86%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 21 gtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatcacattttagta 80
|||| ||||||||||||||||||||||||||||| | || |||| | ||| ||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaatgtatctagtcatgttttagta 74
Query: 81 -ttagatacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
|||||||||||| | ||||||| ||| ||||| ||||||||| |||||||| |||||
Sbjct: 75 tttagatacatccatttctagac-aatttaagacaagaattttgggacggagagagta 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggac 127
||||||||| | ||| ||||||||||||||| ||||||||| ||||
Sbjct: 60 tagatacattcatatttagacaaatctaagacaagaattttgggac 15
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 9 agtactccctccgtcctaaaattcttgtctta 40
||||||| |||||||| |||||||||||||||
Sbjct: 133 agtactctctccgtcccaaaattcttgtctta 102
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 89.7 bits (45), Expect = 1e-17
Identities = 112/133 (84%), Gaps = 1/133 (0%)
Strand = Plus / Plus
Query: 7 ctagtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaa 66
|||||||||||||||||| |||||| ||||||||||||||| || ||| | || |||| |
Sbjct: 1 ctagtactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatcta 60
Query: 67 atcacattttagt-attagatacatccgtatctagacaaatctaagataagaattttagg 125
||| ||||||| |||||||||||| | |||| ||||| ||||| ||||||||| ||
Sbjct: 61 gtcaagttttagtaattagatacatctatttctaaacaaagttaagacaagaattttggg 120
Query: 126 acggagggagtat 138
||| |||||||||
Sbjct: 121 acgaagggagtat 133
Score = 63.9 bits (32), Expect = 6e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
||||||||| | |||||| |||||||||||| || |||||| ||||||||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaataattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtctta 40
|||||||| ||||| |||||||||||||||
Sbjct: 132 tactcccttcgtcccaaaattcttgtctta 103
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 89.7 bits (45), Expect = 1e-17
Identities = 109/129 (84%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
||||||||| ||| |||||||||||||||||||||||||| ||| | || |||| |||||
Sbjct: 5 tactccctctgtcataaaattcttgtcttagatttgtctagatatgaatgtatctaatca 64
Query: 71 catttt-agtattagatacatccgtatctagacaaatctaagataagaattttaggacgg 129
| |||| | ||||||||| || | | |||||||| |||||| |||| ||||| |||||
Sbjct: 65 cgttttgacatttagatacaaccatttttagacaaacctaagacaagatttttaagacgg 124
Query: 130 agggagtat 138
|||||||||
Sbjct: 125 agggagtat 133
Score = 77.8 bits (39), Expect = 4e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 80 attagatacatccgtatctagacaaatctaagataagaattttaggacggagggagtat 138
||||||||||| | ||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct: 62 attagatacattcatatctagacaaatctaagacaagaattttatgacagagggagtat 4
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 87.7 bits (44), Expect = 4e-17
Identities = 111/132 (84%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 8 tagtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaa 67
||||||||| ||||||| ||||||||||||||| ||||||||| ||| | || |||| |
Sbjct: 2 tagtactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatctag 61
Query: 68 tcacattttagta-ttagatacatccgtatctagacaaatctaagataagaattttagga 126
||| ||||||| |||||||||||| | | ||||||| |||||| ||||||||| | |
Sbjct: 62 tcatggtttagtatttagatacatccatgtgtagacaatgctaagacaagaattttggaa 121
Query: 127 cggagggagtat 138
||||||||||||
Sbjct: 122 cggagggagtat 133
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtcta 50
|||||||||||| | |||||||||||||||| |||||||
Sbjct: 132 tactccctccgttccaaaattcttgtcttagcattgtcta 93
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 85.7 bits (43), Expect = 2e-16
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||||||||||| | ||| | |||||||| |||||||||| |||||||| |||| | |
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctagact 72
Query: 71 cattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgga 130
||||||||| |||||| ||||||||||||||||||||||| ||| | || | |||||
Sbjct: 71 cattttagtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacgga 12
Query: 131 gggagta 137
|||||||
Sbjct: 11 gggagta 5
Score = 63.9 bits (32), Expect = 6e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
|||||||||||||||||||||||||| |||| ||| | ||| | ||||||||||||
Sbjct: 76 tagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagta 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatc 64
|||||||||||| | || | ||||||||||||||||||| ||||||| |||||
Sbjct: 5 tactccctccgttccgaattacttgtcttagatttgtctagatacggagatatc 58
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 94 tatctagacaaatctaagataagaattttaggacggagggagtat 138
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 48 tatctagacaaatctaagacaagaattttaggacggagggagtat 4
Score = 79.8 bits (40), Expect = 9e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtcta 50
||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagatttgtcta 44
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 81.8 bits (41), Expect = 2e-15
Identities = 108/129 (83%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
||||||||||||| |||||| |||| || ||||||||| ||| |||| |||| | | |
Sbjct: 5 tactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatctagtta 64
Query: 71 cattttagtatt-agatacatccgtatctagacaaatctaagataagaattttaggacgg 129
|||||||||||| | || ||||| |||||| | | |||||||| ||||||||| ||||||
Sbjct: 65 cattttagtatttaaatgcatccatatctaaaaacatctaagacaagaattttgggacgg 124
Query: 130 agggagtat 138
|||||||||
Sbjct: 125 agggagtat 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagat 43
|||||||||||||| ||||||||||||||||||
Sbjct: 132 tactccctccgtcccaaaattcttgtcttagat 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
||||||||||| ||||||||||||| || | || |||||| |||||||||||||
Sbjct: 60 tagatacatccatatctagacaaattcaaaacaataattttgagacggagggagta 5
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 79.8 bits (40), Expect = 9e-15
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 10 gtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatc 69
||||||||||||| || || | ||||||||| ||||||||| |||||||| |||| | |
Sbjct: 4 gtactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatctagac 63
Query: 70 acattttagtattagatacatccgtatctagacaaatctaagataagaattttaggacgg 129
||||||||| |||| | ||| ||||||||||||||| |||| ||| | ||| | ||||
Sbjct: 64 tcattttagtgctagacatatctgtatctagacaaatcgaagacaagtaatttggaacgg 123
Query: 130 agggagta 137
||||||||
Sbjct: 124 agggagta 131
Score = 63.9 bits (32), Expect = 6e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
||||||||||||||||||||||||| ||||| ||| | || || ||||||||||||
Sbjct: 60 tagatacatccgtatctagacaaatttaagacaagtaattcagaacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatat 61
|||||||||||| | ||| | |||||||| |||||||||| |||| |||||
Sbjct: 131 tactccctccgttccaaattacttgtcttcgatttgtctagatacagatat 81
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 77.8 bits (39), Expect = 4e-14
Identities = 110/131 (83%), Gaps = 2/131 (1%)
Strand = Plus / Plus
Query: 9 agtactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaat 68
||||||||||||||| |||||||||| |||| |||||| || ||||| || |||| | |
Sbjct: 3 agtactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatctagt 62
Query: 69 cacattttagtatt-agatacatccgtatctagacaaatctaagataagaattttaggac 127
|| |||| |||||| |||||||||| |||||||||| |||||| ||||||||| | |
Sbjct: 63 caaattt-agtatttagatacatccagttctagacaaagctaagacaagaattttggaat 121
Query: 128 ggagggagtat 138
|||||||||||
Sbjct: 122 ggagggagtat 132
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 82 tagatacatccgtatctagacaaatctaagataagaattttaggacggagggagta 137
||||||||| |||||||| |||||| |||| ||||||||| |||||||||||||
Sbjct: 60 tagatacattcgtatctaaacaaatataaggcaagaattttgagacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtcta 50
|||||||||| | | |||||||||||||||| ||||||||
Sbjct: 131 tactccctccattccaaaattcttgtcttagctttgtcta 92
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 71.9 bits (36), Expect = 2e-12
Identities = 111/135 (82%), Gaps = 7/135 (5%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatcaaatca 70
|||||||||||||| ||| ||||||||||||||||||||| ||| | || ||| | |||
Sbjct: 5 tactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtatgtagtca 64
Query: 71 cattttagta-ttaga------tacatccgtatctagacaaatctaagataagaatttta 123
| |||| ||| ||||| ||||||| | | |||||||| |||||| |||||||||
Sbjct: 65 cgttttggtatttagatacacctacatccatttatagacaaacctaagacaagaattttg 124
Query: 124 ggacggagggagtat 138
|||||||||||||||
Sbjct: 125 ggacggagggagtat 139
Score = 67.9 bits (34), Expect = 4e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 85 atacatccgtatctagacaaatctaagataagaattttaggacggagggagtat 138
|||||| | ||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct: 57 atacattcatatctagacaaatctaagacaagaagtttgggacggagggagtat 4
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtcta 50
|||||||||||||| |||||||||||||||| ||||||||
Sbjct: 138 tactccctccgtcccaaaattcttgtcttaggtttgtcta 99
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 69.9 bits (35), Expect = 9e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 74 tttagtattagatacatccgtatctagacaaatctaagataagaattttaggacggagg 132
|||||| ||||||||||||||||||||| |||||||||| ||| |||| |||||||||
Sbjct: 37 tttagtgttagatacatccgtatctagataaatctaagacaagctttttgggacggagg 95
Score = 50.1 bits (25), Expect = 8e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 16 cctccgtcctaaaattcttgtcttagatttgtctaaatacggatatatc 64
||||||||| |||| |||||||||||||| |||| |||||||| ||||
Sbjct: 95 cctccgtcccaaaaagcttgtcttagatttatctagatacggatgtatc 47
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatac 55
|||||||||| || |||||||||||||||||||||||||| ||||
Sbjct: 97 tactccctccatcttaaaattcttgtcttagatttgtctagatac 53
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 93 gtatctagacaaatctaagataagaattttaggacggagggagta 137
|||||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 53 gtatctagacaaatctaagacaagaattttaagatggagggagta 97
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtct 49
|||||||| ||| | ||||||||||||||||||||||||
Sbjct: 5 tactcccttcgttccaaaattcttgtcttagatttgtct 43
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 94 tatctagacaaatctaagataagaattttaggacggagggagtat 138
|||| |||||||||||||| ||||||||| | ||| |||||||||
Sbjct: 48 tatcaagacaaatctaagacaagaattttggaacgaagggagtat 4
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 63.9 bits (32), Expect = 6e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 11 tactccctccgtcctaaaattcttgtcttagatttgtctaaatacgga 58
|||||||||||||| |||||||||||||||||||| | || |||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
Score = 63.9 bits (32), Expect = 6e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 90 tccgtatctagacaaatctaagataagaattttaggacggagggagta 137
|||||||||| | |||||||||| ||||||||| ||||||||||||||
Sbjct: 54 tccgtatctaaataaatctaagacaagaattttgggacggagggagta 101
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 87 acatccgtatctagacaaatctaagataagaatttt 122
||||||||||||||| |||||||||| |||||||||
Sbjct: 54 acatccgtatctagataaatctaagacaagaatttt 19
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 26 aaaattcttgtcttagatttgtctaaatacggat 59
|||||||||||||||||||| |||| ||||||||
Sbjct: 19 aaaattcttgtcttagatttatctagatacggat 52
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 81 ttagatacatccgtatctagacaaatctaagataagaattttaggacggagggagtat 138
||||||||||||||||||||| |||||| ||| ||| || | ||||||||| |||||
Sbjct: 61 ttagatacatccgtatctagataaatcttagacaagctttctgggacggaggtagtat 4
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 8 tagtactccctccgtcctaaaattcttgtcttagattt 45
||||||||||||||||| |||| ||||| ||||||||
Sbjct: 103 tagtactccctccgtcccaaaaaacttgttttagattt 66
>RF00906;MIR1122;AAAA02018804.1/15100-15261 39946:Oryza sativa
Indica Group
Length = 162
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 ctagtactccctccgtcctaaaat 30
||||||||||||||||||||||||
Sbjct: 162 ctagtactccctccgtcctaaaat 139
>RF00906;MIR1122;AP002901.2/60176-60097 39947:Oryza sativa
Japonica Group
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagtactccctccgtcctaaaat 30
|||||||||||||||||||||||
Sbjct: 2 tagtactccctccgtcctaaaat 24
>RF00906;MIR1122;AP008218.1/18423778-18423640 39947:Oryza sativa
Japonica Group
Length = 139
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 tagtactccctccgtcctaaaat 30
|||||||||||||||||||||||
Sbjct: 138 tagtactccctccgtcctaaaat 116
>RF00906;MIR1122;AACV01016055.1/37981-37873 39947:Oryza sativa
Japonica Group
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 119 ttttaggacggagggagtatgtg 141
|||||||||||||||||||||||
Sbjct: 23 ttttaggacggagggagtatgtg 1
>RF00906;MIR1122;AL845346.4/42836-42971 4530:Oryza sativa (rice)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tagtactccctccgtcctaaaat 30
|||||||||||||||||||||||
Sbjct: 2 tagtactccctccgtcctaaaat 24
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 8 tagtactccctccgtcctaaaattcttgtc 37
||||||||||||||||| ||||| ||||||
Sbjct: 125 tagtactccctccgtccgaaaatacttgtc 96
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 tagtactccctccgtcctaaaattcttgtc 37
||||||||||||||||| ||||| ||||||
Sbjct: 2 tagtactccctccgtccgaaaatacttgtc 31
>RF00906;MIR1122;AAAA02021832.1/90208-90105 39946:Oryza sativa
Indica Group
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 agtactccctccgtcctaaaat 30
||||||||||||||||||||||
Sbjct: 102 agtactccctccgtcctaaaat 81
>RF00906;MIR1122;AAAA02035863.1/20568-20679 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 agtactccctccgtcctaaaat 30
||||||||||||||||||||||
Sbjct: 3 agtactccctccgtcctaaaat 24
>RF00906;MIR1122;AP008215.1/5740843-5740754 39947:Oryza sativa
Japonica Group
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 119 ttttaggacggagggagtatgt 140
||||||||||||||||||||||
Sbjct: 23 ttttaggacggagggagtatgt 2
>RF00906;MIR1122;AAAA02026762.1/1669-1579 39946:Oryza sativa Indica
Group
Length = 91
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 119 ttttaggacggagggagtatgt 140
||||||||||||||||||||||
Sbjct: 69 ttttaggacggagggagtatgt 90
>RF00906;MIR1122;AACV01016591.1/15647-15516 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 119 ttttaggacggagggagtatgt 140
||||||||||||||||||||||
Sbjct: 23 ttttaggacggagggagtatgt 2
