miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF567062.1/42666-42586 4565:Triticum aestivum
(bread wheat)
Length = 81
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 106 gtcaattaatttggatcggagggagta 132
|||||||||||||||||||||||||||
Sbjct: 31 gtcaattaatttggatcggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 107 tcaattaatttggatcggagggagta 132
||||||||||||||||||||||||||
Sbjct: 52 tcaattaatttggatcggagggagta 77
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgatccaaattaatt 29
||||||||||||||||||||||||
Sbjct: 5 tactccctccgatccaaattaatt 28
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgatccaaattaatt 29
||||||||||||||||||||||||
Sbjct: 77 tactccctccgatccaaattaatt 54
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 36 aatttgtcaagatatggatgtatctagt 63
|||||||| |||||||||||||||||||
Sbjct: 35 aatttgtctagatatggatgtatctagt 62
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 6 tactccctccgatccaaattaattaactctaatttgtcaagatatggatgtatcta 61
||||||||||| ||| ||||| | |||| |||||||| | |||||||||||||||
Sbjct: 5 tactccctccgtcccatattaagtgactcaaatttgtccaaatatggatgtatcta 60
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 6 tactccctccgatccaaattaattaactctaatttgtcaagatatggatgtatcta 61
|||| ||||||||||| || |||| ||| |||||| | |||||||||||||||||
Sbjct: 5 tacttcctccgatccatatcaattgtctcaaatttgcccagatatggatgtatcta 60
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 75 tctaggtacatccgtatctagataaagtggagtcaattaatttggatcggagggagta 132
||||| |||||||||||||||| ||| || ||| ||||||||| |||||||||||
Sbjct: 74 tctagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 98 aaagtggagtcaattaatttggatcggagggagtaaca 135
||||| |||||| ||||||||| ||||||||||||||
Sbjct: 39 aaagttgagtcacttaatttgggacggagggagtaaca 2
