miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 37 ttgtctgaaatttgtgtaaattcggatgtatctag 71
|||||| |||||||| ||||| |||||||||||||
Sbjct: 109 ttgtcttaaatttgtctaaatacggatgtatctag 75
>RF00906;MIR1122;EF059989.1/67769-67635 29664:Brachypodium
sylvaticum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 38 tgtctgaaatttgtgtaaattcggatgtatctagacactaaatagcatctagatacatc 96
||||||||| ||| |||||| | |||||||||||||||||| |||||||||||||
Sbjct: 28 tgtctgaaaattgcttaaatttgaatgtatctagacactaaaacatatctagatacatc 86
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 44 aaatttgtgtaaattcggatgtatctagacacta 77
|||||||| |||| | ||||||||||||||||||
Sbjct: 103 aaatttgtctaaacttggatgtatctagacacta 70
