miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54696_tae-miR1121:pmrd
Length = 98
Score = 123 bits (62), Expect = 3e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgc 76
|||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct: 8 gtactccctctgtaaagaaatattagagtgtttagatcacttaagtagtgatctaaacgc 67
Query: 77 tgttatatttctttacggagggagta 102
| ||||||||||||||||||||||||
Sbjct: 68 tcttatatttctttacggagggagta 93
Score = 93.7 bits (47), Expect = 3e-20
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacg 75
||||||||||| | ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 95 agtactccctccgtaaagaaatataagagcgtttagatcactacttaagtgatctaaaca 36
Query: 76 ctgttatatttctttacggagggagta 102
|| | |||||||||||| |||||||||
Sbjct: 35 ctctaatatttctttacagagggagta 9
>48304_ave-miR1120:pmrd
Length = 85
Score = 109 bits (55), Expect = 5e-25
Identities = 79/87 (90%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcactaagtagtgatctaaacgc 76
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 agtactccctctgtaaagaaatataagagcgtttagatcacta-----tgatctaaacgc 56
Query: 77 tgttatatttctttacggagggagtat 103
| |||||||||||||| ||||||||||
Sbjct: 57 tcttatatttctttacagagggagtat 83
Score = 103 bits (52), Expect = 3e-23
Identities = 76/84 (90%), Gaps = 5/84 (5%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagtagtgatctaaacgctg 78
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 82 tactccctctgtaaagaaatataagagcgtttagatca-----tagtgatctaaacgctc 28
Query: 79 ttatatttctttacggagggagta 102
|||||||||||||| |||||||||
Sbjct: 27 ttatatttctttacagagggagta 4
>54761_tur-miR1120:pmrd
Length = 84
Score = 73.8 bits (37), Expect = 3e-14
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 22 tccctctgcaaagaaatataagagcgtttagatcactaagtagtgatctaaacgctgtta 81
|||||||| ||| ||||||||| | |||||||||||||||||||||||||| | | |||
Sbjct: 4 tccctctgtaaactaatataagaccttttagatcactaagtagtgatctaaaaggtctta 63
Query: 82 tatttctttacggagggagta 102
|||| ||||| |||||||||
Sbjct: 64 tattagtttacagagggagta 84
Score = 58.0 bits (29), Expect = 2e-09
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagtagtgatctaaacgctg 78
||||||||||| ||| ||||||||| | |||||||||||| |||||||||||| | |
Sbjct: 84 tactccctctgtaaactaatataagaccttttagatcactacttagtgatctaaaaggtc 25
Query: 79 ttatatttctttacggaggga 99
||||||| ||||| ||||||
Sbjct: 24 ttatattagtttacagaggga 4
>54756_tmo-miR1120:pmrd
Length = 85
Score = 60.0 bits (30), Expect = 4e-10
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 22 tccctctgcaaagaaatataagagcgtttagatcactaa-gtagtgatctaaacgctgtt 80
|||||||| ||| ||||||||| | ||||||||||||| ||||||||||||| | | ||
Sbjct: 4 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 63
Query: 81 atatttctttacggagggagta 102
||||| ||||| |||||||||
Sbjct: 64 atattagtttacagagggagta 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 68/82 (82%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacgct 77
||||||||||| ||| ||||||||| | |||||||||||| |||||||||||| | |
Sbjct: 85 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggt 26
Query: 78 gttatatttctttacggaggga 99
||||||| ||||| ||||||
Sbjct: 25 cttatattagtttacagaggga 4
>54753_tae-miR2033b:pmrd
Length = 72
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta 59
|||||| |||| ||||||||||||||| |||||||||||||
Sbjct: 72 tactccttctgtaaagaaatataagagtgtttagatcacta 32
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 62 tagtgatctaaacgctgttatatttctttacggagggagta 102
||||||||||||| || |||||||||||||| || ||||||
Sbjct: 32 tagtgatctaaacactcttatatttctttacagaaggagta 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 73 acgctgttatatttctttacggagggagta 102
||||| ||||||||||||| ||||||||||
Sbjct: 30 acgctcttatatttctttatggagggagta 1
