miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgct 77
|||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgct 64
Query: 78 gttatatttctttacggagggagtat 103
|||||||||||||| ||||| ||||
Sbjct: 65 cttatatttctttacagagggtgtat 90
Score = 97.6 bits (49), Expect = 3e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 23 ccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgctgtta 81
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 82 tatttctttacggagggagta 102
||||||||||| |||| ||||
Sbjct: 25 tatttctttacagaggtagta 5
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 109 bits (55), Expect = 8e-24
Identities = 79/87 (90%), Gaps = 5/87 (5%)
Strand = Plus / Minus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcactaagtagtgatctaaacgc 76
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 85 agtactccctctgtaaagaaatataagagcgtttagatcacta-----tgatctaaacgc 31
Query: 77 tgttatatttctttacggagggagtat 103
| |||||||||||||| ||||||||||
Sbjct: 30 tcttatatttctttacagagggagtat 4
Score = 103 bits (52), Expect = 5e-22
Identities = 76/84 (90%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagtagtgatctaaacgctg 78
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca-----tagtgatctaaacgctc 59
Query: 79 ttatatttctttacggagggagta 102
|||||||||||||| |||||||||
Sbjct: 60 ttatatttctttacagagggagta 83
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcactaa-gtagtgatctaaacgc 76
||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacac 63
Query: 77 tgttatatttctttacggagggagta 102
| ||||||||||||||||||||||||
Sbjct: 64 tcttatatttctttacggagggagta 89
Score = 73.8 bits (37), Expect = 5e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgct 77
||||||||| | ||||||||||||||| |||||||| |||| | ||||||||| |||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgct 30
Query: 78 gttatatttctttacggagggagta 102
|||||||||||||| || ||||||
Sbjct: 29 cttatatttctttacagaaggagta 5
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum (bread
wheat)
Length = 92
Score = 99.6 bits (50), Expect = 8e-21
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 35 aaatataagagcgtttagatcact-aagtagtgatctaaacgctgttatatttctttacg 93
||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct: 73 aaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttctttacg 14
Query: 94 gagggagtat 103
||||||||||
Sbjct: 13 gagggagtat 4
Score = 69.9 bits (35), Expect = 7e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgct 77
||||||||| | |||||||||||||||||||||| |||||| | |||||||| ||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 78 gttatatttctttac 92
|||||||| |||||
Sbjct: 65 cttatatttgtttac 79
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 16 tagtactccctctgcaaagaaatataagagcgtttagatcactaag-tagtgatctaaac 74
|||||||||||||| ||| ||||||||| ||||||||||| |||| |||||||||||||
Sbjct: 2 tagtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaac 61
Query: 75 gctgttatatttctttacggaggga 99
||| |||||||||||||| ||||||
Sbjct: 62 gctcttatatttctttactgaggga 86
Score = 77.8 bits (39), Expect = 3e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacg 75
|||| |||||| | ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 91 agtagtccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacg 32
Query: 76 ctgttatatttctttacggagggagta 102
| |||||||| ||||| |||||||||
Sbjct: 31 cccttatatttgtttacagagggagta 5
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 93.7 bits (47), Expect = 5e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacg 75
||||||||||| | ||||||||||||||||||||||| |||| ||||||| ||||||| |
Sbjct: 3 agtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatg 62
Query: 76 ctgttatatttctttacggagggagta 102
|| ||||||||||||| |||||||||
Sbjct: 63 ctcttatatttctttatagagggagta 89
Score = 83.8 bits (42), Expect = 5e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgc 76
||||||||||| |||||||||||||||| ||||||| |||| | |||| |||||||||
Sbjct: 90 gtactccctctataaagaaatataagagcatttagataactactttagtgctctaaacgc 31
Query: 77 tgttatatttctttacggagggagta 102
| |||||||||||||| |||||||||
Sbjct: 30 tcttatatttctttaccgagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 87.7 bits (44), Expect = 3e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgct 77
||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 78 gttatatt 85
|||||||
Sbjct: 65 cttatatt 72
Score = 75.8 bits (38), Expect = 1e-13
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaagt-agtgatctaaacgctgttatatttctttacgg 94
|||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacag 13
Query: 95 agggagtatt 104
||||||||||
Sbjct: 12 agggagtatt 3
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 77/87 (88%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaa-gtagtgatctaaacgct 77
||||||||||| ||| |||||||||||| |||||||||||| |||||||||||| ||||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 78 gttatatttctttacggagggagtatt 104
||||||| ||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagtatt 3
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacgct 77
||||||||||| ||| |||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 78 gttatatttctttacggagggagta 102
||||||| ||||| |||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaa-gtagtgatctaaacgct 77
||||| ||| ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 89 tactcactccgcaaagaaatataagagtgtctagatcactaaagtagtgatctaaacgct 30
Query: 78 gttatatttctttac 92
|||||||| |||||
Sbjct: 29 cttatatttgtttac 15
Score = 71.9 bits (36), Expect = 2e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 25 ctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacgctgttata 83
||||| ||| ||||||||||||||||||||||||| |||||||||| || || |||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcactactttagtgatctagacactcttata 70
Query: 84 tttctttacggagggagtat 103
||||||| ||||| ||||||
Sbjct: 71 tttctttgcggagtgagtat 90
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 85.7 bits (43), Expect = 1e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaagtagtgatctaaacgctgttatatttctttacgga 95
||||||| ||| |||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 21 aatataaaagcatttagatcactaagtagtgatctaaatgctcttatattagtttacgga 80
Query: 96 gggagta 102
|||||||
Sbjct: 81 gggagta 87
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagtagtgatctaaacgctg 78
||||||||| | ||| ||||||||||| |||||||||||| |||||||||||| |||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcactacttagtgatctaaatgctt 28
Query: 79 ttatatt 85
|||||||
Sbjct: 27 ttatatt 21
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 38 tataagagcgtttagatcactaa-gtagtgatctaaacgctgttatatttctttacggag 96
||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||||||
Sbjct: 70 tataagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggag 11
Query: 97 ggagtat 103
|||||||
Sbjct: 10 ggagtat 4
Score = 52.0 bits (26), Expect = 2e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacgct 77
||||||||| | ||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 78 gttata 83
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 83.8 bits (42), Expect = 5e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgct 77
||||||||| | |||||||||||||||| ||||||||||| |||||||||||| || |||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 78 gttatatttctttacggagggagtat 103
||||||| ||||| ||||||||||
Sbjct: 29 cttatattagtttacagagggagtat 4
Score = 81.8 bits (41), Expect = 2e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgct 77
||||||||||| ||| ||||||||||| || ||||||||| | ||||||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 78 gttatatttctttacggagggagta 102
||||||||||||||||||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgct 77
||||||||||| ||| ||||||||||| ||||||||||| || |||| |||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 78 gttatatttctttacggagggagta 102
||||||| |||||||||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 58.0 bits (29), Expect = 3e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgct 77
||||||||| | ||| ||||||||||||||||||| |||| | ||||||||||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 78 gttatatttctttacggagggagta 102
||||||| ||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 79.8 bits (40), Expect = 7e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgct 77
||||||||||| ||| ||||||||||||||| ||||||| || ||||||||||||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 78 gttatatttctttacggagg 97
||||||| ||||||||||
Sbjct: 65 cttatattagtttacggagg 84
Score = 63.9 bits (32), Expect = 4e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcacta-agtagtgatctaaacgctgttatatttctttacgg 94
|||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactattttagtgatccaaacgctcttatattaatttacag 13
Query: 95 agggagta 102
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 79.8 bits (40), Expect = 7e-15
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 16 tagtactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaac 74
|||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||
Sbjct: 2 tagtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaac 61
Query: 75 gctgttatatttctttacggagggagta 102
||| ||||||| |||||||||||||||
Sbjct: 62 gctcttatattagtttacggagggagta 89
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaag-tagtgatctaaacgct 77
||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 78 gttatatttctttacggagggagta 102
||||||| ||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 77.8 bits (39), Expect = 3e-14
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 16 tagtactccctctgcaaagaaatataagagcgtttagatcactaagtagtgatctaaacg 75
|||||||||||||| ||| ||||||||||| |||||||||||| || |||||||||||
Sbjct: 91 tagtactccctctgtaaactaatataagagcatttagatcactacttaatgatctaaacg 32
Query: 76 ctgttatatttctttacggagggagta 102
|| ||||||| |||| | ||||||||
Sbjct: 31 cttttatattagtttatgaagggagta 5
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaagtagtgatctaaacgctgttatatttctttacgga 95
||||||| ||||||||||||| |||||||||||||||| ||| ||||||| ||||| ||
Sbjct: 22 aatataaaagcgtttagatcattaagtagtgatctaaatgctcttatattagtttacaga 81
Query: 96 gggagta 102
|||||||
Sbjct: 82 gggagta 88
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 77.8 bits (39), Expect = 3e-14
Identities = 76/86 (88%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacgc 76
|||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaacac 29
Query: 77 tgttatatttctttacggagggagta 102
||| |||| |||||||||||||||
Sbjct: 28 --ttacatttatttacggagggagta 5
Score = 73.8 bits (37), Expect = 5e-13
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 47 gtttagatcactaa-gtagtgatctaaacgctgttatatttctttacggagggagta 102
|||||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 31 gtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcactaag-tagtgatctaaacgc 76
||||||||||| ||| |||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgc 63
Query: 77 tgttatatttctttacggagggagta 102
| ||||||| |||||||||||||||
Sbjct: 64 tcttatattagtttacggagggagta 89
Score = 50.1 bits (25), Expect = 7e-06
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacgct 77
||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 78 gttatatttctttacggagggagta 102
||||||| |||| |||||||||
Sbjct: 29 cttatattggtttatagagggagta 5
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcactaa-gtagtgatctaaacgc 76
|||||||||| | | |||||||||||| |||||||||||||| ||||| ||||||| |
Sbjct: 4 gtactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatga 63
Query: 77 tgttatatttctttacggagggagta 102
| |||||||||||||| |||||||||
Sbjct: 64 tcttatatttctttacagagggagta 89
Score = 73.8 bits (37), Expect = 5e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgct 77
||||||||||| |||||||||||||| | ||||||| |||| | |||||||||||| |
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacatt 30
Query: 78 gttatatttctttacggagggagta 102
|||||||||| |||||||||||||
Sbjct: 29 cttatatttctgtacggagggagta 5
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 73.8 bits (37), Expect = 5e-13
Identities = 77/90 (85%), Gaps = 4/90 (4%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta----agtagtgatctaaac 74
|||||||| || ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcactagagtagtagtgatctaaac 33
Query: 75 gctgttatatttctttacggagggagtatt 104
||| | |||||| || || |||||||||||
Sbjct: 32 gctctcatatttattcacagagggagtatt 3
Score = 54.0 bits (27), Expect = 4e-07
Identities = 73/88 (82%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta----agtagtgatctaaac 74
||||||||||| || |||||| |||||||||||||||||| |||||||||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcactactactctagtgatctaaac 64
Query: 75 gctgttatatttctttacggagggagta 102
||| ||||||| ||||| ||||||||
Sbjct: 65 gctcttatattattttacatagggagta 92
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 5e-13
Identities = 80/93 (86%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 15 atagtactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaa 73
||||||||||||| | ||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct: 1 atagtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaa 60
Query: 74 cgctgttatatttctttacggagggagtattgt 106
||| ||||||| ||||| |||| ||||||||
Sbjct: 61 tgctcttatattagtttacagaggaagtattgt 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgct 77
|||| |||||| ||| ||||||||||| |||||||||||| | ||||| |||||||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 78 gttatatttctttacggagggagta 102
||||||| |||||||||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 73.8 bits (37), Expect = 5e-13
Identities = 77/91 (84%), Gaps = 7/91 (7%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta-------agtagtgatcta 71
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagtagtagtgatcta 64
Query: 72 aacgctgttatatttctttacggagggagta 102
|| | | |||||||||||| ||||||||||
Sbjct: 65 aatgatcttatatttctttgtggagggagta 95
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 62 tagtgatctaaacgctgttatatttctttacggagggagtat 103
|||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagtat 4
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcact-aagtagtgatctaaacgctgttatatttctttacgg 94
||||||||||||||||||||||| || |||||||| |||| || ||||||| |||||||
Sbjct: 72 aatataagagcgtttagatcactaaaatagtgatcaaaacactcttatattaatttacgg 13
Query: 95 agggagta 102
||||||||
Sbjct: 12 agggagta 5
Score = 58.0 bits (29), Expect = 3e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacgc 76
|||||||||| | ||| |||||||||| |||| |||||||| | ||||||||||||||
Sbjct: 4 gtactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgc 63
Query: 77 tgttatatttctttacggagggagt 101
| ||||||| ||||| ||||||||
Sbjct: 64 tcttatattagtttactgagggagt 88
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 71.9 bits (36), Expect = 2e-12
Identities = 61/69 (88%), Gaps = 4/69 (5%)
Strand = Plus / Minus
Query: 31 aaagaaatataagagcgtttagatcactaa----gtagtgatctaaacgctgttatattt 86
||||||||| |||||||| ||||||||||| ||||||||||||||| | ||||||||
Sbjct: 80 aaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaacgttcttatattt 21
Query: 87 ctttacgga 95
|||||||||
Sbjct: 20 ctttacgga 12
Score = 63.9 bits (32), Expect = 4e-10
Identities = 66/77 (85%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 31 aaagaaatataagagcgtttagatcactaag----tagtgatctaaacgctgttatattt 86
|||||||||||||| |||||||||||||| |||||||||| ||||| || |||||
Sbjct: 17 aaagaaatataagaacgtttagatcactactattttagtgatctagacgctcttgtattt 76
Query: 87 ctttacggagggagtat 103
||||||||| |||||||
Sbjct: 77 ctttacggatggagtat 93
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcactaa-gtagtgatctaaacgc 76
|||||||||||| ||| ||||||| | | ||||||||||||| ||||| |||||||| |
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacac 31
Query: 77 tgttatatttctttacggagggagta 102
| ||||||| |||||||||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 67.9 bits (34), Expect = 3e-11
Identities = 77/89 (86%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 15 atagtactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaa 73
||||||||||||||| ||| |||||||||| |||||||| ||| || |||| ||||||
Sbjct: 1 atagtactccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaa 58
Query: 74 cgctgttatatttctttacggagggagta 102
|||| ||||||| |||||||||||||||
Sbjct: 59 cgctattatattagtttacggagggagta 87
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 67.9 bits (34), Expect = 3e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaa 73
||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacgct 77
||||||||||| ||| ||||||||| |||||||||||||| |||| ||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 78 gttatatttctttacggagggagta 102
||||||| |||||||||||||||
Sbjct: 29 tttatattagtttacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 72/86 (83%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcactaag-tagtgatctaaacgc 76
|||||||||| | ||| ||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgt 63
Query: 77 tgttatatttctttacggagggagta 102
| ||||||| ||||| |||||||||
Sbjct: 64 tcttatattagtttacagagggagta 89
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgct 77
||||||||||| ||| ||||||||||||||||||| ||| |||||||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 78 gttatatttctttacggagggagta 102
||||||| ||||| | |||||||
Sbjct: 65 tttatattagtttacagggggagta 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 72/87 (82%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcactaagt-agtgatctaaacg 75
||||||||| ||| ||| ||||||| ||| |||||| ||||| | ||| |||||||||
Sbjct: 91 agtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacg 32
Query: 76 ctgttatatttctttacggagggagta 102
|| ||||||| ||||| |||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 65.9 bits (33), Expect = 1e-10
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcacta-agtagtgatctaaacgctgttatatttctttacgg 94
|||||||||||||||||||||||| || ||||||||| ||| ||||||| |||||||
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatattagtttacgg 126
Query: 95 agggagtat 103
|||||||||
Sbjct: 127 agggagtat 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaag-tagtgatctaaacgct 77
||||||||| | ||| ||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 78 gttatatt 85
|||||||
Sbjct: 74 cttatatt 67
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 17 agtactccctctgcaaagaaatataagagcgtttag 52
||||||||||||| ||| |||||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacg 75
|||| |||||||| ||| ||||||||| | ||||||||||| ||||||||||||||| |
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaag 62
Query: 76 ctgttatatttctttacggagggagta 102
| ||||||| ||||| |||||||||
Sbjct: 63 gtcttatattagtttacagagggagta 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcacta-agtagtgatctaaacgc 76
|||||||||||| ||| ||||||||| | |||||||||||| |||||||||||| |
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaagg 31
Query: 77 tgttatatttctttacggaggga 99
| ||||||| ||||| ||||||
Sbjct: 30 tcttatattagtttacagaggga 8
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 60.0 bits (30), Expect = 7e-09
Identities = 76/89 (85%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 15 atagtactccctctgcaaagaaatataagagcgtttagatcactaag-tagtgatctaaa 73
||||||||||||||| ||| ||||||| || |||||||| ||||| |||| ||||||
Sbjct: 1 atagtactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaa 58
Query: 74 cgctgttatatttctttacggagggagta 102
|||| ||||||| |||||||||||||||
Sbjct: 59 cgctcttatattagtttacggagggagta 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 16 tagtactccctctgcaaagaaatataagagcgtttaga 53
|||||||||||| | ||| ||||||||||||||||||
Sbjct: 90 tagtactccctccgtaaactaatataagagcgtttaga 53
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcactaag-tagtgatctaaacgct 77
||||||||| | ||| ||||||||||| |||| |||| ||| ||||||||||||| ||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 78 gttatatttctttacggagggagta 102
||||||| |||||||||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 36 aatataagagcgtttagatcactaag-tagtgatctaaacgctgttatatttctttacgg 94
||||||||||| ||||||| | ||| |||||||||||| ||| ||||||| ||||| |
Sbjct: 72 aatataagagcatttagattattaaaatagtgatctaaatgcttttatattagtttacag 13
Query: 95 agggagtattgt 106
||||||||||||
Sbjct: 12 agggagtattgt 1
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcacta 59
||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcactaag-tagtgatctaaacgctgttatatttctttacgg 94
|||||||||||||| |||||| ||| | ||||||||||| || ||||||| |||||||
Sbjct: 22 aatataagagcgttgagatcattaaaattgtgatctaaactctcttatattagtttacgg 81
Query: 95 agggagt 101
|||||||
Sbjct: 82 agggagt 88
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 54.0 bits (27), Expect = 4e-07
Identities = 74/89 (83%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 17 agtactccctctgcaaagaaatataagagcgtttagatcacta---agtagtgatctaaa 73
|||| |||||||| ||| ||||||||| | |||||||||||| ||||||||||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaa 62
Query: 74 cgctgttatatttctttacggagggagta 102
| | ||||||| ||||| |||||||||
Sbjct: 63 aggtcttatattagtttacagagggagta 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcacta 59
|||||||||||| ||| ||||||||| | ||||||||||||
Sbjct: 92 gtactccctctgtaaactaatataagaccttttagatcacta 51
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 21 ctccctctgcaaagaaatataagagcgtttagatcacta 59
||||||||| |||||||||||||| | ||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcacta 38
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgttta 51
||||||||||| |||||||||||||| ||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgttta 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 62 tagtgatctaaacgctgttatatttctttacggagggag 100
|||||||||||| | | |||||||||||||| |||||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggag 76
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 73/87 (83%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 19 tactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgct 77
||||||||| | ||| ||||||||| | ||||||| ||| |||||||| |||||| |||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 78 gttatatttctttacggagggagtatt 104
||||||| |||| ||||||||||||
Sbjct: 65 cttatattagtttatggagggagtatt 91
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 36 aatataagagcgtttagatcact-aagtagtgatctaaacgctgttatatttctttacgg 94
|||||||||||||||||| ||| ||||| ||||||||| ||| ||||||| |||||
Sbjct: 22 aatataagagcgtttagaatactaaagtaatgatctaaatgcttttatattagtttacaa 81
Query: 95 agggagta 102
||||||||
Sbjct: 82 agggagta 89
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 18 gtactccctctgcaaagaaatataagagcgtttagatcact-aagtagtgatctaaacgc 76
|||||||||||| ||| |||||||||| ||||||| ||| || ||||| |||||| ||
Sbjct: 4 gtactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgc 63
Query: 77 tgttatatttctttacggaggga 99
| ||||||| |||||| |||||
Sbjct: 64 tcttatattagtttacgaaggga 86
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 23 ccctctgcaaagaaatataagagcgtttagatcactaa 60
||||||| ||| ||||||||||| |||||||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaa 46
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 17 agtactccctctgcaaagaaatataagagcgttt 50
||||||||||||| ||| |||||||||||||||
Sbjct: 98 agtactccctctgtaaactaatataagagcgttt 65
