miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;AADN02013299.1/17575-17492 9031:Gallus gallus
(chicken)
Length = 84
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 8 gctttgaggtgatctagcagcacatcatggtttgtagaaacaaggagatacagaccattc 67
||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gctttgaggagatgtagcagcacatcatggtttgtagggacaaggagatacagaccattc 60
Query: 68 tgagctgcctcttgacctca 87
|| |||||||| | ||||||
Sbjct: 61 tgggctgcctcattacctca 80
>RF00455;mir-15;AAWZ01041379.1/4938-5023 28377:Anolis carolinensis
(green anole)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 gaggtgatctagcagcacatcatggtttgtagaaaca-aggagatacagaccattctgag 71
|||||||| |||||||||| |||||||||||| ||| || ||||||||||| ||||| |
Sbjct: 6 gaggtgatgtagcagcacaacatggtttgtagggacacagaagatacagaccgttctggg 65
Query: 72 ctgcctc 78
|||||||
Sbjct: 66 ctgcctc 72
>RF00455;mir-15;AAVX01142701.1/355-269 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 8 gctttgaggtgatctagcagcacatcatggtttgtag 44
|||| |||||||| |||||||||||||||||||||||
Sbjct: 1 gcttggaggtgatgtagcagcacatcatggtttgtag 37
>RF00455;mir-15;AADN02021066.1/63906-63821 9031:Gallus gallus
(chicken)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tctagcagcacatcatggtttg 41
||||||||||||||||||||||
Sbjct: 13 tctagcagcacatcatggtttg 34
>RF00455;mir-15;CT027989.8/7473-7560 7955:Danio rerio (zebrafish)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tagcagcacatcatggtttgta 43
||||||||||||||||||||||
Sbjct: 15 tagcagcacatcatggtttgta 36
>RF00455;mir-15;AAVX01075355.1/1195-1112 7868:Callorhinchus milii
(ghost shark)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 ctttgaggtgatctagcagcacatcatggtttgt 42
||||| |||||| ||||||||||| |||||||||
Sbjct: 2 ctttgtggtgatgtagcagcacataatggtttgt 35
