miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 145 bits (73), Expect = 9e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 60
Query: 63 taaatagctacag 75
|||||||||||||
Sbjct: 61 taaatagctacag 73
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 5 gagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacacta 64
||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 62
Query: 65 aatagctac 73
|||||||||
Sbjct: 63 aatagctac 71
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtttc--ctgcctatcaaacgccattatcac 60
||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtatcatctgtc-gtcaaacgccattatcac 59
Query: 61 actaaatagc 70
||||||||||
Sbjct: 60 actaaatagc 69
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 62
||||||| ||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 60
Query: 63 taaatagctac 73
|||| ||||||
Sbjct: 61 taaacagctac 71
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/60 (90%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 11 tggagtgtgacaatggtgtttgt--ttcctgcctatcaaacgccattatcacactaaata 68
||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgtaatcactgac-atcaaacgccattatcacactaaata 67
