miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 32 tttgtctagatatggatgtatgtaaacgcattttagttatagatacatccgtatctacac 91
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct: 37 tttgtctaaatatggatgtatgtagttacattttagtgttagatacatccgtatctaaac 96
Query: 92 aaa 94
|||
Sbjct: 97 aaa 99
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 54.0 bits (27), Expect = 4e-07
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 32 tttgtctagatatggatgtatgtaaacgcattttagttatagatacatccgtatctacac 91
|||||||||||| |||||||| || || ||||||||| |||||| |||||||||| ||
Sbjct: 99 tttgtctagatacggatgtatctagactcattttagtgctagatatctccgtatctagac 40
Query: 92 aaa 94
|||
Sbjct: 39 aaa 37
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 37 ctagatatggatgtatgtaaacgcattttagttatagatacatc 80
||||| |||| |||||||| || ||||||||||||||||||||
Sbjct: 93 ctagaaatggttgtatgtagacttattttagttatagatacatc 50
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 38 tagatatggatgtatgtaaacgcattttagttatagatacatcc 81
|||| |||||||||| || ||| ||||||||| |||||||||||
Sbjct: 93 tagaaatggatgtatctagacgtattttagttctagatacatcc 50
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 43 atggatgtatgtaaacgcattttagttatagatacatcc 81
|||||||||| || | | |||||||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatcc 76
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 32 tttgtctagatatggatgtatgtaaacgcattttagttatagatacatccgtatctacac 91
|||||||||||| |||||||| || || ||||||||| |||| | ||| ||||||| ||
Sbjct: 37 tttgtctagatacggatgtatctagactcattttagtgctagacatatctgtatctagac 96
Query: 92 aaa 94
|||
Sbjct: 97 aaa 99
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 43 atggatgtatgtaaacgcattttagttatagatacatcc 81
|||||||||| || | | |||||||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatcc 76
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 43 atggatgtatgtaaacgcattttagttatagatacatcc 81
|||||||||| || ||| ||||||||| |||||||||||
Sbjct: 38 atggatgtatctagacgtattttagttctagatacatcc 76
