miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 8 ctcgccttgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtcc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcgccttgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtcc 60
Query: 68 ccttcaaccagctactgcgtcgtgaatca 96
|||||||||||||||||||||||||||||
Sbjct: 61 ccttcaaccagctactgcgtcgtgaatca 89
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 137 bits (69), Expect = 3e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 10 cgccttgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtcccc 69
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 3 cgccttgccgtggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtcccc 62
Query: 70 ttcaaccagctactgcgtcgtgaat 94
||||||||||||||||| |||||||
Sbjct: 63 ttcaaccagctactgcgccgtgaat 87
>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
(zebrafish)
Length = 85
Score = 97.6 bits (49), Expect = 3e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 22 gctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaaccagcta 81
|||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct: 13 gctggtaaaacggaaccaagtcgggtgtttgcgagaggtttggtccctttcaaccagcta 72
Query: 82 ctgcgtcgtgaat 94
||||| |||||||
Sbjct: 73 ctgcgccgtgaat 85
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 79.8 bits (40), Expect = 6e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 15 tgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaa 74
|||| |||||||||||||||||||||||| | | || | |||||||||||||||||||||
Sbjct: 8 tgctctggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaa 66
Query: 75 ccagctac 82
||||||||
Sbjct: 67 ccagctac 74
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 gaggtttggtccccttcaaccagcta 81
||||||||||||||||||||||||||
Sbjct: 48 gaggtttggtccccttcaaccagcta 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 tgctgtggctggtcaaacggaaccaag 41
|||| ||||||||||||||||||||||
Sbjct: 8 tgctctggctggtcaaacggaaccaag 34
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ggtttggtccccttcaaccagctac 82
|||||||||||||||||||||||||
Sbjct: 45 ggtttggtccccttcaaccagctac 69
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 ggtttggtccccttcaaccagctactgc 85
||||||||||||||||||||||| ||||
Sbjct: 54 ggtttggtccccttcaaccagctgctgc 81
>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 aggtttggtccccttcaaccagctac 82
||||||||||||||| ||||||||||
Sbjct: 49 aggtttggtcccctttaaccagctac 74
