miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 123 bits (62), Expect = 4e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 19 atctttggttatctagctgtatgagtgccgtattttcttcataaagctagataaccgaaa 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtgccgtattttcttcataaagctagataaccgaaa 60
Query: 79 gt 80
||
Sbjct: 61 gt 62
>RF00237;mir-9;AAGU02809341.1/1530-1589 9785:Loxodonta africana
(African savanna elephant)
Length = 60
Score = 69.9 bits (35), Expect = 6e-12
Identities = 53/57 (92%), Gaps = 4/57 (7%)
Strand = Plus / Plus
Query: 25 ggttatctagctgtatgagtgccgtattttc-ttcataaagctagataaccgaaagt 80
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 7 ggttatctagctgtatgagtg---tattttccttcataaagctagataaccgaaagt 60
>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis
(cape rock hyrax)
Length = 62
Score = 65.9 bits (33), Expect = 9e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtgccgtattttcttcataaagctagataaccgaaag 79
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgccacagagccgtcataaagctagataaccgaaag 61
Query: 80 t 80
|
Sbjct: 62 t 62
>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 62
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 19 atctttggttatctagctgtatgagtgccgtattttcttcataaagctagataac 73
||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtggtgtggagtcttcataaagctagataac 55
>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 19 atctttggttatctagctgtatgagtgccgtattttcttcataaagctagataaccgaaa 78
||||||||||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtg--ttctgctcgtcataaagctagataaccgaaa 58
Query: 79 gt 80
||
Sbjct: 59 gt 60
>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 61
Score = 60.0 bits (30), Expect = 6e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 19 atctttggttatctagctgtatgagtgccgtattttcttcataaagctagataaccgaaa 78
||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtggtgtggagtc-tcataaagctagataaccgaaa 59
Query: 79 gt 80
||
Sbjct: 60 gt 61
>RF00237;mir-9;ABRT010326462.1/47-105 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tcttcataaagctagataaccgaaagt 80
|||||||||||||||||||||||||||
Sbjct: 33 tcttcataaagctagataaccgaaagt 59
>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
spiralis
Length = 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtg 45
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtg 45
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;ABRR01432464.1/48-109 30538:Lama pacos (alpaca)
Length = 62
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 27 ttatctagctgtatgagtgccgtattttcttcataaagctagataaccgaaagt 80
||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 9 ttatctagctgtatgagtggtgtggagtattcataaagctagataaccgaaagt 62
>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtg 45
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 atctttggttatctagctgtatgagt 44
||||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
(pea aphid)
Length = 67
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtg 45
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
gambiae str. PEST
Length = 62
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtg 45
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
mojavensis
Length = 61
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtg 45
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
(black-legged tick)
Length = 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtg 45
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
(zebrafish)
Length = 59
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagt 44
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagt 44
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
(red flour beetle)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagt 44
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ctttggttatctagctgtatgagt 44
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
floridae (Florida lancelet)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgag 43
||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgag 25
>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tttggttatctagctgtatgagtg 45
||||||||||||||||||||||||
Sbjct: 4 tttggttatctagctgtatgagtg 27
>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
Length = 61
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatga 42
|||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatga 24
>RF00237;mir-9;AAVX01083387.1/420-360 7868:Callorhinchus milii
(ghost shark)
Length = 61
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatgagtg 45
||||||||| ||||||||||||||||
Sbjct: 2 tctttggttttctagctgtatgagtg 27
>RF00237;mir-9;AAZO01004437.1/24877-24818 121224:Pediculus humanus
corporis (human body louse)
Length = 60
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tctttggttatctagctgtatg 41
||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatg 23
