miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34778_tni-mir-203:mirbase
Length = 74
Score = 147 bits (74), Expect = 2e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 16 ctgattaagtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttagga 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgattaagtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttagga 60
Query: 76 ccacttgaccagtc 89
||||||||||||||
Sbjct: 61 ccacttgaccagtc 74
>34631_fru-mir-203:mirbase
Length = 74
Score = 139 bits (70), Expect = 4e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 16 ctgattaagtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttagga 75
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ctgattaagtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttagga 60
Query: 76 ccacttgaccagtc 89
||||||||||||||
Sbjct: 61 ccacttgaccagtc 74
>34359_dre-mir-203a:mirbase
Length = 96
Score = 89.7 bits (45), Expect = 4e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 32 agtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggaccacttg 91
Query: 83 accag 87
|||||
Sbjct: 92 accag 96
>25520_pma-mir-203a:mirbase
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccact 80
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 17 agtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
>25994_gga-mir-203:mirbase
Length = 98
Score = 81.8 bits (41), Expect = 9e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 18 agtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggaccacttg 77
Query: 83 accag 87
|||||
Sbjct: 78 accag 82
>26502_tgu-mir-203:mirbase
Length = 132
Score = 81.8 bits (41), Expect = 9e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 63 agtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccacttg 122
Query: 83 accag 87
|||||
Sbjct: 123 accag 127
>25824_xtr-mir-203:mirbase
Length = 74
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 9 agtggttcttaacagttcaacagttctctatcgaaattgtgaaatgtttaggaccacttg 68
Query: 83 a 83
|
Sbjct: 69 a 69
>27421_mdo-mir-203:mirbase
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 15 agtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggaccacttg 74
Query: 83 a 83
|
Sbjct: 75 a 75
>34360_dre-mir-203b:mirbase
Length = 85
Score = 73.8 bits (37), Expect = 2e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttcttt-tgatgattgtgaaatgttcaggaccacttg 72
Query: 83 a 83
|
Sbjct: 73 a 73
>25521_pma-mir-203b:mirbase
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 17 agtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccacttg 76
Query: 83 ac 84
||
Sbjct: 77 ac 78
>27800_mml-mir-203:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 27 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactag 86
Query: 83 acc 85
|||
Sbjct: 87 acc 89
>28522_hsa-mir-203:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 27 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactag 86
Query: 83 acc 85
|||
Sbjct: 87 acc 89
>29377_hsa-mir-3545:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 73 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactag 14
Query: 83 acc 85
|||
Sbjct: 13 acc 11
>29378_hsa-mir-3545:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 73 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactag 14
Query: 83 acc 85
|||
Sbjct: 13 acc 11
>30899_ppy-mir-203:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 27 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactag 86
Query: 83 acc 85
|||
Sbjct: 87 acc 89
>31929_mmu-mir-203:mirbase
Length = 76
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| |||||||||||||||| | | |||||||||||||||||||||||| |
Sbjct: 10 agtggttcttgacagttcaacagttctgtagcacaattgtgaaatgtttaggaccactag 69
Query: 83 acc 85
|||
Sbjct: 70 acc 72
>32793_rno-mir-203:mirbase
Length = 97
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 14 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactag 73
Query: 83 acc 85
|||
Sbjct: 74 acc 76
>33031_rno-mir-3545:mirbase
Length = 115
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 88 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactag 29
Query: 83 acc 85
|||
Sbjct: 28 acc 26
>33032_rno-mir-3545:mirbase
Length = 115
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 88 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactag 29
Query: 83 acc 85
|||
Sbjct: 28 acc 26
>26763_cfa-mir-203:mirbase
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccact 80
||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 18 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 75
>30281_ptr-mir-203:mirbase
Length = 109
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccact 80
||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 26 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
