miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00696;mir-203;BAAE01000181.1/2185-2106 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 159 bits (80), Expect = 8e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 10 gtcattctgattaagtggttctcaacagttcaacagttctttgagaaaattgtgaaatgt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcattctgattaagtggttctcaacagttcaacagttctttgagaaaattgtgaaatgt 60
Query: 70 ttaggaccacttgaccagtc 89
||||||||||||||||||||
Sbjct: 61 ttaggaccacttgaccagtc 80
>RF00696;mir-203;CT027758.7/42576-42497 7955:Danio rerio
(zebrafish)
Length = 80
Score = 89.7 bits (45), Expect = 6e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 14 agtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggaccacttg 73
Query: 83 accag 87
|||||
Sbjct: 74 accag 78
>RF00696;mir-203;ABQO010581221.1/929-850 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 83.8 bits (42), Expect = 4e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccact 80
||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 14 agtggttcttaacagttcaacagttctattaaaaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AADN02003787.1/117406-117485 9031:Gallus gallus
(chicken)
Length = 80
Score = 81.8 bits (41), Expect = 2e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 14 agtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggaccacttg 73
Query: 83 accag 87
|||||
Sbjct: 74 accag 78
>RF00696;mir-203;AAVX01626047.1/560-639 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 81.8 bits (41), Expect = 2e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 agtggttttcaacagttcaacagttctttattaacattgtgaaatgtttaggaccacttg 73
Query: 83 a 83
|
Sbjct: 74 a 74
>RF00696;mir-203;AAFR03013559.1/2925-3004 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 73.8 bits (37), Expect = 4e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 14 agtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggaccacttg 73
Query: 83 a 83
|
Sbjct: 74 a 74
>RF00696;mir-203;BX255913.8/25815-25737 7955:Danio rerio
(zebrafish)
Length = 79
Score = 73.8 bits (37), Expect = 4e-13
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttcttt-tgatgattgtgaaatgttcaggaccacttg 72
Query: 83 a 83
|
Sbjct: 73 a 73
>RF00696;mir-203;AAVX01234553.1/1127-1048 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 69.9 bits (35), Expect = 6e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 14 agtggttctaatcagttcaacagttctctatcgaaattgtgaaatgtttaggaccacttg 73
Query: 83 acc 85
|||
Sbjct: 74 acc 76
>RF00696;mir-203;AAYZ01488695.1/188-267 9978:Ochotona princeps
(American pika)
Length = 80
Score = 54.0 bits (27), Expect = 4e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 23 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 82
||||||||| | ||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 14 agtggttcttagcagttcaacagttctgtagcgcaattgtgaaatgtttaggaccactcg 73
Query: 83 acc 85
|||
Sbjct: 74 acc 76
