miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 94
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 21 tactccctccgttccataataaaggtcatggttttagttcaaatctaaactaaaaccatg 80
||||||||||| |||| ||||| |||||||||||||||||||| | |||||||||| |
Sbjct: 90 tactccctccgatccaaaataagtgtcatggttttagttcaaatttgtactaaaaccacg 31
Query: 81 aaacttattatggatc 96
| ||||||| ||||||
Sbjct: 30 acacttattttggatc 15
Score = 69.9 bits (35), Expect = 8e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 24 tccctccgttccataataaaggtcatggttttagttcaaatctaaactaaaaccatgaaa 83
|||||||| |||| ||||| ||| |||||||||| ||||| | |||||||||||||| |
Sbjct: 8 tccctccgatccaaaataagtgtcgtggttttagtacaaatttgaactaaaaccatgaca 67
Query: 84 cttattatggatcagagagagta 106
|||||| |||||| ||| |||||
Sbjct: 68 cttattttggatcggagggagta 90
>RF00906;MIR1122;DQ537335.1/11354-11447 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 45 gtcatggttttagttcaaatctaaactaaaaccat 79
|||||||||||||||||||| | ||||||||||||
Sbjct: 66 gtcatggttttagttcaaatttgaactaaaaccat 32
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 48 atggttttagttcaaatctaaactaaaaccatga 81
||||||||||||||||| | ||||||||||||||
Sbjct: 32 atggttttagttcaaatttgaactaaaaccatga 65
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21 tactccctccgttccataataaaggtcatggttttagttcaaat 64
|||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatacttgtcgtggttttagttcaaat 48
>RF00906;MIR1122;CR626933.1/11895-11804 4571:Triticum turgidum
Length = 92
Score = 48.1 bits (24), Expect = 3e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 26 cctccgttccataataaaggtcatggttttagttcaaatctaaactaaaacc 77
||||||| ||| ||||| ||| |||||||||||||||| | ||||||||||
Sbjct: 85 cctccgtcccaaaataagtgtcttggttttagttcaaatttgaactaaaacc 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 50 ggttttagttcaaatctaaactaaaaccatgaaacttatt 89
||||||||||||||| | ||||||||||| || |||||||
Sbjct: 34 ggttttagttcaaatttgaactaaaaccaagacacttatt 73
>RF00906;MIR1122;AACV01013085.1/19238-19395 39947:Oryza sativa
Japonica Group
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 cctactccctccgttccataata 41
|||||||||||||||||||||||
Sbjct: 3 cctactccctccgttccataata 25
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 cctactccctccgttccataata 41
|||||||||||||||||||||||
Sbjct: 156 cctactccctccgttccataata 134
>RF00906;MIR1122;AM932683.1/22409-22315 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 49 tggttttagttcaaatctaaactaaaacca 78
|||||||||||||||| | |||||||||||
Sbjct: 62 tggttttagttcaaatttgaactaaaacca 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 tggttttagttcaaatctaaactaaaacca 78
|||||||||||||||| | |||||||||||
Sbjct: 33 tggttttagttcaaatttgaactaaaacca 62
>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ctactccctccgttccataata 41
||||||||||||||||||||||
Sbjct: 4 ctactccctccgttccataata 25
>RF00906;MIR1122;AAAA02009816.1/6724-6859 39946:Oryza sativa Indica
Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 ctactccctccgttccataata 41
||||||||||||||||||||||
Sbjct: 133 ctactccctccgttccataata 112
>RF00906;MIR1122;AAAA02007333.1/13137-13002 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 ctactccctccgttccataata 41
||||||||||||||||||||||
Sbjct: 133 ctactccctccgttccataata 112
>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ctactccctccgttccataata 41
||||||||||||||||||||||
Sbjct: 4 ctactccctccgttccataata 25
