miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;AADN02013299.1/17575-17492 9031:Gallus gallus
(chicken)
Length = 84
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 8 gctttgaggagatgtagcagcacatcatggtttgtagggacaaggagatacagaccattc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctttgaggagatgtagcagcacatcatggtttgtagggacaaggagatacagaccattc 60
Query: 68 tgggctgcctcattacctcaagga 91
||||||||||||||||||||||||
Sbjct: 61 tgggctgcctcattacctcaagga 84
>RF00455;mir-15;AAWZ01041379.1/4938-5023 28377:Anolis carolinensis
(green anole)
Length = 86
Score = 99.6 bits (50), Expect = 6e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 gaggagatgtagcagcacatcatggtttgtagggaca-aggagatacagaccattctggg 71
|||| |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||
Sbjct: 6 gaggtgatgtagcagcacaacatggtttgtagggacacagaagatacagaccgttctggg 65
Query: 72 ctgcctcattacct 85
||||||||||||||
Sbjct: 66 ctgcctcattacct 79
>RF00455;mir-15;AAVX01142701.1/355-269 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 8 gctttgaggagatgtagcagcacatcatggtttgtagg 45
|||| |||| ||||||||||||||||||||||||||||
Sbjct: 1 gcttggaggtgatgtagcagcacatcatggtttgtagg 38
>RF00455;mir-15;CT027989.8/7473-7560 7955:Danio rerio (zebrafish)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgtagcagcacatcatggtttgta 43
||||||||||||||||||||||||
Sbjct: 13 tgtagcagcacatcatggtttgta 36
>RF00455;mir-15;ABQF01022934.1/39859-39944 59729:Taeniopygia
guttata
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgtagcagcacatcatggtttg 41
||||||||||||||||||||||
Sbjct: 13 tgtagcagcacatcatggtttg 34
>RF00455;mir-15;AAVX01075355.1/1195-1112 7868:Callorhinchus milii
(ghost shark)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 ctttgaggagatgtagcagcacatcatggtttgt 42
||||| || ||||||||||||||| |||||||||
Sbjct: 2 ctttgtggtgatgtagcagcacataatggtttgt 35
>RF00455;mir-15;AAVX01576111.1/286-371 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgtagcagcacatcatggtttg 41
||||||||||||||||||||||
Sbjct: 13 tgtagcagcacatcatggtttg 34
