miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 79.8 bits (40), Expect = 8e-15
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                  
Query: 8  atatgcctggctccctgtatgccactcgcgtagctgccaa 47
          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgccactcgcgtagctgccaa 40



 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 75  ttggctctaccgcggatggcgtgcgaggagccaagcatga 114
           |||||||||| |||||||||||||||||||||||||||||
Sbjct: 97  ttggctctactgcggatggcgtgcgaggagccaagcatga 136




>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
           (sorghum)
          Length = 106

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 73  cgttggctctaccgcggatggcgtgcgaggagccaagcatga 114
           |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 65  cgttggctctactgcggatggcgtgcgaggagccaagcatga 106



 Score = 73.8 bits (37), Expect = 5e-13
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 8  atatgcctggctccctgtatgccactcgcgtagctgccaac 48
          ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1  atatgcctggctccctgtatgccactcgcttagctgccaac 41




>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
          Length = 85

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 8  atatgcctggctccctgtatgccactcgc 36
          |||||||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgccactcgc 29




>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
          Length = 97

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 14 ctggctccctgtatgccactcgcgtagctgccaactc 50
          ||||||||||||||||||||||| | |||||||||||
Sbjct: 1  ctggctccctgtatgccactcgcatggctgccaactc 37



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 73  cgttggctctaccgcggatggcgtgcgaggagccaa 108
           ||||||||| || |||||||||||||||||||||||
Sbjct: 62  cgttggctccactgcggatggcgtgcgaggagccaa 97




>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
          (sorghum)
          Length = 101

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 8  atatgcctggctccctgtatgccactcgc 36
          |||||||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgccactcgc 29




>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
          Length = 100

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 8  atatgcctggctccctgtatgccactcgcgtagctgccaac 48
          ||||||||||||||||||||||| ||||| | |||||||||
Sbjct: 1  atatgcctggctccctgtatgccgctcgcatggctgccaac 41




>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
          Length = 86

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 85  cgcggatggcgtgcgaggagccaagcatg 113
           ||||||||||||||||||||||| |||||
Sbjct: 57  cgcggatggcgtgcgaggagccatgcatg 85



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 atgcctggctccctgtatgcca 31
          ||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgcca 24




>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
          Length = 90

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 80  tctaccgcggatggcgtgcgaggagccaagcat 112
           ||||| |||| ||||||||||||||||||||||
Sbjct: 56  tctacggcgggtggcgtgcgaggagccaagcat 88



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgcctggctccctgtatgccact 33
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tatgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgccac 25



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  tggcgtgcgaggagccaagcatg 113
           |||||||||||||||||||||||
Sbjct: 65  tggcgtgcgaggagccaagcatg 87




>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tatgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgccac 25




>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
          trichocarpa
          Length = 90

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tatgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgccac 25



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  tggcgtgcgaggagccaagcat 112
           ||||||||||||||||||||||
Sbjct: 67  tggcgtgcgaggagccaagcat 88




>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
          Length = 89

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tatgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 1  tatgcctggctccctgtatgccac 24



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  tggcgtgcgaggagccaagcat 112
           ||||||||||||||||||||||
Sbjct: 67  tggcgtgcgaggagccaagcat 88




>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
          (castor bean)
          Length = 90

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tatgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgccac 25



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  tggcgtgcgaggagccaagcat 112
           ||||||||||||||||||||||
Sbjct: 67  tggcgtgcgaggagccaagcat 88




>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
          Length = 89

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  atatgcctggctccctgtatgcca 31
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
          Length = 86

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  atatgcctggctccctgtatgcca 31
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccactc 34
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactc 27




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccactc 34
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactc 27




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccactc 34
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactc 27




>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccactc 34
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccactc 27




>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
          pekinensis
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 atgcctggctccctgtatgccac 32
          |||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgccac 25




>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 atgcctggctccctgtatgccac 32
          |||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgccac 25




>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
          (thale cress)
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tatgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 86  gcggatggcgtgcgaggagccaagcat 112
           |||| ||||||||||||||||||||||
Sbjct: 62  gcgggtggcgtgcgaggagccaagcat 88



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgcctggctccctgtatgccact 33
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
          (papaya)
          Length = 86

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 atgcctggctccctgtatgcca 31
          ||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgcca 24



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 88  ggatggcgtgcgaggagccaagcatg 113
           |||||||||||||||||||| |||||
Sbjct: 60  ggatggcgtgcgaggagccatgcatg 85




>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
          burmannicoides
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
          Length = 92

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
          (sorghum)
          Length = 90

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25