miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 79.8 bits (40), Expect = 1e-14
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 40 cgccttgatgtggctggtctggcgaaaccaagacaggtgttttagtgaggtttggtcccc 99
||||||| ||||||||||| || ||||||| ||||||||| || ||||||||||||||
Sbjct: 3 cgccttgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtcccc 62
Query: 100 ttcaggcggctactgcgtcgtgaa 123
|||| | ||||||||||||||||
Sbjct: 63 ttcaaccagctactgcgtcgtgaa 86
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 67.9 bits (34), Expect = 4e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 38 cacgccttgatgtggctggtctggcgaaaccaagacaggtgttttagtgaggtttggtcc 97
||||||||| |||||||||| || ||||||| ||||||||| ||||||||||||||
Sbjct: 1 cacgccttgccgtggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtcc 60
Query: 98 ccttcaggcggctactgcgtcgtgaa 123
|||||| | ||||||||| ||||||
Sbjct: 61 ccttcaaccagctactgcgccgtgaa 86
