miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||||||||||||||||||| |||||||||
Sbjct: 66 aaagttgagtcacttattttgggacggagggagta 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 101 ttgagtcacttattttgggactgagggagtacta 134
||||||||||||||||||||| || |||||||||
Sbjct: 34 ttgagtcacttattttgggac-gatggagtacta 2
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||||||||||||||||||| |||||||||
Sbjct: 39 aaagttgagtcacttattttgggacagagggagta 5
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagtact 133
|||||||||||||||| |||||||| |||||||||||
Sbjct: 56 aaagttgagtcacttaatttgggacggagggagtact 92
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||||||||||||||||||| |||||||||
Sbjct: 39 aaagttgagtcacttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttggga 120
||||||||||||||||||||||||
Sbjct: 94 aaagttgagtcacttattttggga 117
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagtac 132
||||||||||||||||||||||||| ||| ||||||
Sbjct: 63 aaagttgagtcacttattttgggacagagcgagtac 98
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 101 ttgagtcacttattttgggactgagggagtac 132
||||||||||||||||||||| ||||||||||
Sbjct: 81 ttgagtcacttattttgggacggagggagtac 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 101 ttgagtcacttattttgggactgaggga 128
||||||||||||||||||||| ||||||
Sbjct: 35 ttgagtcacttattttgggacagaggga 8
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||||||||||||| ||||| |||||||||
Sbjct: 69 aaagttgagtcacttatttcgggacggagggagta 103
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
|||||||||||||||| |||||||| |||||||||
Sbjct: 39 aaagttgagtcacttaatttgggacggagggagta 5
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 100 gttgagtcacttattttgggactgagggagtacta 134
||||||||||||| |||||||| ||||||||||||
Sbjct: 82 gttgagtcacttaatttgggacggagggagtacta 116
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 101 ttgagtcacttattttgggactgagggagta 131
||||||||||||||||||||| |||||||||
Sbjct: 35 ttgagtcacttattttgggacagagggagta 5
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 101 ttgagtcacttattttgggactgagggagta 131
||||||||||||||||||||| |||||||||
Sbjct: 82 ttgagtcacttattttgggacggagggagta 112
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 104 agtcacttattttgggactgagggagtacta 134
|||||||||||||||||| ||||||||||||
Sbjct: 84 agtcacttattttgggacggagggagtacta 114
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||| ||||||||||||||| |||||||||
Sbjct: 67 aaagttgagacacttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 101 ttgagtcacttattttgggactgagggagta 131
||||| ||||||||||||||| |||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 97 aaagttgagtcacttattttgggactgagggag 129
||||||||| ||||||||||||||| |||||||
Sbjct: 39 aaagttgagacacttattttgggacggagggag 7
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 97 aaagttgagtcacttattttgggactgagggag 129
||||||||| ||||||||||||||| |||||||
Sbjct: 39 aaagttgagacacttattttgggacggagggag 7
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 98 aagttgagtcacttattttgggactgagggagta 131
|||||||| ||||||||||||||| |||| ||||
Sbjct: 56 aagttgagacacttattttgggacggaggaagta 89
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 gtcacttattttgggactgagggagtact 133
||||||||||||||||| |||||||||||
Sbjct: 38 gtcacttattttgggacagagggagtact 66
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 100 gttgagtcacttattttgggactgagggagta 131
|||||| ||||||||||||||| |||||||||
Sbjct: 70 gttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 100 gttgagtcacttattttgggactgagggagta 131
|||||| ||||||||||||||| |||||||||
Sbjct: 36 gttgagacacttattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 102 tgagtcacttattttgggactgagggagta 131
|||| ||||||||||||||| |||||||||
Sbjct: 71 tgagacacttattttgggacggagggagta 100
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagtac 132
||||||||| |||||||||||||| ||||||||||
Sbjct: 67 aaagttgagacacttattttgggatggagggagtac 102
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagtac 132
||||||||| || |||||||||||| ||||||||||
Sbjct: 67 aaagttgagacagttattttgggacggagggagtac 102
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagtac 132
|||||| || ||||||||||||||| ||||||||||
Sbjct: 67 aaagttaagacacttattttgggacggagggagtac 102
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||| ||||||||||||||| || ||||||
Sbjct: 39 aaagttgagacacttattttgggacggatggagta 5
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||| || |||||||||||| |||||||||
Sbjct: 67 aaagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||| || |||||||||||| |||||||||
Sbjct: 67 aaagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 101 ttgagtcacttattttgggactgagggagta 131
||||| ||||||||||||||| |||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||| || |||||||||||| |||||||||
Sbjct: 67 aaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 101 ttgagtcacttattttgggactgagggagta 131
||||| ||||||||||||||| |||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||| || |||||||||||| |||||||||
Sbjct: 67 aaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagta 131
||||||||| |||||||||||||| |||||||||
Sbjct: 74 aaagttgagacacttattttgggatggagggagta 108
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa Japonica
Group
Length = 246
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 107 cacttattttgggactgagggagtac 132
||||||||||||||| ||||||||||
Sbjct: 26 cacttattttgggacggagggagtac 1
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 107 cacttattttgggactgagggagtac 132
||||||||||||||| ||||||||||
Sbjct: 78 cacttattttgggaccgagggagtac 103
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 97 aaagttgagtcacttattttgggactgagggagtacta 134
||||||||| || ||||||||||| ||||||||||||
Sbjct: 66 aaagttgagacagttattttgggatggagggagtacta 103
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 110 ttattttgggactgagggagtactat 135
|||||||||||| |||||||||||||
Sbjct: 26 ttattttgggacggagggagtactat 1
