miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
          Length = 82

 Score =  125 bits (63), Expect = 9e-29
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                      
Query: 9  gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
          |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct: 8  gaggtagtagattgaatagttgtggggtttaagtcctccctctgagataactatacagtc 67

                         
Query: 69 tactgtctttcctaa 83
          |||||||||||||||
Sbjct: 68 tactgtctttcctaa 82




>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
          (zebra mbuna)
          Length = 82

 Score =  109 bits (55), Expect = 6e-24
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                      
Query: 9  gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
          |||||||||||||||||||||||||||| ||  |||||| | ||||||||||||||||||
Sbjct: 8  gaggtagtagattgaatagttgtggggtttacatcctccttttgagataactatacaatc 67

                         
Query: 69 tactgtctttcctaa 83
          |||||||||||||||
Sbjct: 68 tactgtctttcctaa 82




>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score =  105 bits (53), Expect = 9e-23
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                      
Query: 9  gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
          ||||||||||||||||||||||||||||  ||||||||| | ||||||||||||||| ||
Sbjct: 8  gaggtagtagattgaatagttgtggggttcatgtcctccttttgagataactatacagtc 67

                       
Query: 69 tactgtctttcct 81
          |||||||||||||
Sbjct: 68 tactgtctttcct 80




>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
          (zebrafish)
          Length = 83

 Score =  101 bits (51), Expect = 1e-21
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                      
Query: 9  gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
          ||||||||||||||||||||||||| |||||   ||||||| ||||||||||||||||||
Sbjct: 8  gaggtagtagattgaatagttgtggagtataaaacctccctttgagataactatacaatc 67

                     
Query: 69 tactgtctttc 79
          |||||||||||
Sbjct: 68 tactgtctttc 78




>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 81

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
          ||||||||||||||||||||||||||||  | | ||||||| || | |||||||||||||
Sbjct: 8  gaggtagtagattgaatagttgtggggt-cacggcctccctgtgtgctaactatacaatc 66

                       
Query: 69 tactgtctttcct 81
          |||||||||||||
Sbjct: 67 tactgtctttcct 79




>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 83

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 65/73 (89%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  gaggtagtagattgaatagttgtggggta-tatgtcctccctctgagataactatacaat 67
          ||||||||||||||||||||||||||||  | |  ||||  | |||||||||||||||||
Sbjct: 8  gaggtagtagattgaatagttgtggggttgtctaacctctttttgagataactatacaat 67

                       
Query: 68 ctactgtctttcc 80
          |||||||||||||
Sbjct: 68 ctactgtctttcc 80




>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
          (zebrafish)
          Length = 83

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 48 ctctgagataactatacaatctactgtctttcctaa 83
          ||||||||||||||||||||||||||||||||||||
Sbjct: 48 ctctgagataactatacaatctactgtctttcctaa 83




>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 83

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 52 gagataactatacaatctactgtctttcctaa 83
          ||||||||||||||||||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcctaa 83




>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
          (green anole)
          Length = 81

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 52 gagataactatacaatctactgtctttccta 82
          |||||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttccta 80




>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 47 cctctgagataactatacaatctactgtctttcct 81
          |||||||||||||||| ||||||||||||||||||
Sbjct: 45 cctctgagataactatgcaatctactgtctttcct 79




>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 53 agataactatacaatctactgtctttcct 81
          |||||||||||||||||||||||||||||
Sbjct: 51 agataactatacaatctactgtctttcct 79




>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
          rock hyrax)
          Length = 79

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 54 gataactatacaatctactgtctttcct 81
          ||||||||||||||||||||||||||||
Sbjct: 50 gataactatacaatctactgtctttcct 77




>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
          (Japanese medaka)
          Length = 84

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 9  gaggtagtagattgaatagttgtggggt 36
          ||||||||||||||||||||||||||||
Sbjct: 8  gaggtagtagattgaatagttgtggggt 35




>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
          (ghost shark)
          Length = 81

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 52 gagataactatacaatctactgtctttc 79
          ||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttc 77




>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 83

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 51 tgagataactatacaatctactgtctttcc 80
          ||||||||||||||| ||||||||||||||
Sbjct: 51 tgagataactatacagtctactgtctttcc 80




>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 78

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 56 taactatacaatctactgtctttcct 81
          ||||||||||||||||||||||||||
Sbjct: 51 taactatacaatctactgtctttcct 76




>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
          rock hyrax)
          Length = 81

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 52 gagataactatacaatctactgtctttcc 80
          |||||||||||||| ||||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttcc 78




>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
          nigroviridis
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 52 gagataactatacaatctactgtctttc 79
          |||||||||||||| |||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttc 77




>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
          (Japanese medaka)
          Length = 82

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 53 agataactatacaatctactgtctttcctaa 83
          ||||||||||||||  |||||||||||||||
Sbjct: 52 agataactatacaacttactgtctttcctaa 82