miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 125 bits (63), Expect = 1e-28
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 9 gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||
Sbjct: 8 gaggtagtagattgaatagttgtggggtttaagtcctccctctgagataactatacagtc 67
Query: 69 tactgtctttcctaa 83
|||||||||||||||
Sbjct: 68 tactgtctttcctaa 82
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 109 bits (55), Expect = 6e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 9 gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
|||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||
Sbjct: 8 gaggtagtagattgaatagttgtggggtttacatcctccttttgagataactatacaatc 67
Query: 69 tactgtctttcctaa 83
|||||||||||||||
Sbjct: 68 tactgtctttcctaa 82
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 105 bits (53), Expect = 9e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 9 gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
|||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| ||
Sbjct: 8 gaggtagtagattgaatagttgtggggttcatgtcctccttttgagataactatacagtc 67
Query: 69 tactgtctttcct 81
|||||||||||||
Sbjct: 68 tactgtctttcct 80
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 9 gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 8 gaggtagtagattgaatagttgtggagtataaaacctccctttgagataactatacaatc 67
Query: 69 tactgtctttc 79
|||||||||||
Sbjct: 68 tactgtctttc 78
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 81.8 bits (41), Expect = 1e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 gaggtagtagattgaatagttgtggggtatatgtcctccctctgagataactatacaatc 68
|||||||||||||||||||||||||||| | | ||||||| || | |||||||||||||
Sbjct: 8 gaggtagtagattgaatagttgtggggt-cacggcctccctgtgtgctaactatacaatc 66
Query: 69 tactgtctttcct 81
|||||||||||||
Sbjct: 67 tactgtctttcct 79
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 73.8 bits (37), Expect = 3e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 gaggtagtagattgaatagttgtggggta-tatgtcctccctctgagataactatacaat 67
|||||||||||||||||||||||||||| | | |||| | |||||||||||||||||
Sbjct: 8 gaggtagtagattgaatagttgtggggttgtctaacctctttttgagataactatacaat 67
Query: 68 ctactgtctttcc 80
|||||||||||||
Sbjct: 68 ctactgtctttcc 80
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 48 ctctgagataactatacaatctactgtctttcctaa 83
||||||||||||||||||||||||||||||||||||
Sbjct: 48 ctctgagataactatacaatctactgtctttcctaa 83
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 52 gagataactatacaatctactgtctttcctaa 83
||||||||||||||||||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcctaa 83
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 52 gagataactatacaatctactgtctttccta 82
|||||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttccta 80
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 47 cctctgagataactatacaatctactgtctttcct 81
|||||||||||||||| ||||||||||||||||||
Sbjct: 45 cctctgagataactatgcaatctactgtctttcct 79
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 agataactatacaatctactgtctttcct 81
|||||||||||||||||||||||||||||
Sbjct: 51 agataactatacaatctactgtctttcct 79
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 54 gataactatacaatctactgtctttcct 81
||||||||||||||||||||||||||||
Sbjct: 50 gataactatacaatctactgtctttcct 77
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 gaggtagtagattgaatagttgtggggt 36
||||||||||||||||||||||||||||
Sbjct: 8 gaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 gagataactatacaatctactgtctttc 79
||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttc 77
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tgagataactatacaatctactgtctttcc 80
||||||||||||||| ||||||||||||||
Sbjct: 51 tgagataactatacagtctactgtctttcc 80
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 taactatacaatctactgtctttcct 81
||||||||||||||||||||||||||
Sbjct: 51 taactatacaatctactgtctttcct 76
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 gagataactatacaatctactgtctttcc 80
|||||||||||||| ||||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttcc 78
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 gagataactatacaatctactgtctttc 79
|||||||||||||| |||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttc 77
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 53 agataactatacaatctactgtctttcctaa 83
|||||||||||||| |||||||||||||||
Sbjct: 52 agataactatacaacttactgtctttcctaa 82
