miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 113 bits (57), Expect = 4e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 8 aatgctttgctaaagctggtaaaaaggaaccaaatcacctcttgaatggatttggtcccc 67
|||||||||||||||||||||||| |||||||||||| || || |||||||||||||||
Sbjct: 1 aatgctttgctaaagctggtaaaatggaaccaaatcaactattctatggatttggtcccc 60
Query: 68 ttcaaccagctgtagct 84
|||||||||||||||||
Sbjct: 61 ttcaaccagctgtagct 77
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 8 aatgctttgctaaagctggtaaaaaggaaccaaatcacctcttgaatggatttggtcccc 67
||||||||||| |||||||| ||| ||||||||||| || | | ||||||||||||||
Sbjct: 1 aatgctttgctgaagctggtcaaatggaaccaaatcggctgctcactggatttggtcccc 60
Query: 68 ttcaaccagctgtagct 84
|||||||||||||||||
Sbjct: 61 ttcaaccagctgtagct 77
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 9 atgctttgctaaagctggtaaaaaggaaccaaatcacctcttgaatggatttggtcccct 68
||||||||||| ||||||||||| ||||||| ||| | | ||||||||||||||||
Sbjct: 2 atgctttgctagagctggtaaaatggaaccagatcggccgtatgatggatttggtcccct 61
Query: 69 tcaaccagctgtagct 84
||||||||||||||||
Sbjct: 62 tcaaccagctgtagct 77
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggatttggtccccttcaaccagctgtagct 84
||||||||||||||||||||||||||||||
Sbjct: 48 ggatttggtccccttcaaccagctgtagct 77
>RF00446;mir-133;CAAE01007044.1/175-261 99883:Tetraodon
nigroviridis
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 8 aatgctttgctaaagctggtaaaaaggaaccaaatcacctcttgaatggatttggtcccc 67
||||||||||| ||||||| ||| ||||||| ||| ||| || ||||||||||||||
Sbjct: 1 aatgctttgctgcagctggtcaaatggaaccagatctccttctgtctggatttggtcccc 60
Query: 68 ttcaaccag 76
|||||||||
Sbjct: 61 ttcaaccag 69
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 51 gaatggatttggtccccttcaaccagctgtagc 83
||||| |||||||||||||||||||||||||||
Sbjct: 62 gaatgcatttggtccccttcaaccagctgtagc 94
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tggatttggtccccttcaaccagctgt 80
|||||||||||||||||||||||||||
Sbjct: 47 tggatttggtccccttcaaccagctgt 73
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtagc 83
|||||||||||||||||||||||||||
Sbjct: 35 atttggtccccttcaaccagctgtagc 61
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtagc 83
|||||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgtagc 96
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtagc 83
|||||||||||||||||||||||||||
Sbjct: 55 atttggtccccttcaaccagctgtagc 81
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtagc 83
|||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtagc 78
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtagc 83
|||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtagc 75
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtagc 83
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtagc 83
|||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtagc 75
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 tggatttggtccccttcaaccagctg 79
||||||||||||||||||||||||||
Sbjct: 46 tggatttggtccccttcaaccagctg 71
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtag 82
||||||||||||||||||||||||||
Sbjct: 53 atttggtccccttcaaccagctgtag 78
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtag 82
||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtag 77
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgtag 82
||||||||||||||||||||||||||
Sbjct: 54 atttggtccccttcaaccagctgtag 79
>RF00446;mir-133;AAGJ02035428.1/18887-18799
7668:Strongylocentrotus purpuratus
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 ggatttggtccccttcaaccagctgtagc 83
||||||||||||||||||||||| |||||
Sbjct: 50 ggatttggtccccttcaaccagccgtagc 78
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgta 81
|||||||||||||||||||||||||
Sbjct: 51 atttggtccccttcaaccagctgta 75
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgt 80
||||||||||||||||||||||||
Sbjct: 71 atttggtccccttcaaccagctgt 94
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgt 80
||||||||||||||||||||||||
Sbjct: 47 atttggtccccttcaaccagctgt 70
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 atttggtccccttcaaccagctgt 80
||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgt 93
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tttggtccccttcaaccagctg 79
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
>RF00446;mir-133;AAPN01136163.1/2110-2024 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 22 gctggtaaaaaggaaccaaatcacctcttgaatggatttggtccccttcaaccagctg 79
|||||| ||||||||||| ||| ||||| | ||||||||||||||||||| ||||
Sbjct: 15 gctggtcaaaaggaaccagatcgcctctccacctgatttggtccccttcaaccggctg 72
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 tttggtccccttcaaccagctgtagc 83
||||||||||||||||||||| ||||
Sbjct: 52 tttggtccccttcaaccagctatagc 77
