miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 107 bits (54), Expect = 3e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 17 gacaggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgta 76
|||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||
Sbjct: 11 gacaggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgta 70
Query: 77 ctatccaggg 86
||||||||||
Sbjct: 71 ctatccaggg 80
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 12 ccctggacaggatatcatcatatactgtaagttcgttatggtgacactacagtatagatg 71
||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||
Sbjct: 6 ccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatagatg 65
Query: 72 atgtactatccagggtctcat 92
|||||||||||||||| ||||
Sbjct: 66 atgtactatccagggtttcat 86
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 77.8 bits (39), Expect = 2e-14
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 21 ggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgtacta 79
|||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgtgatga-gacactacagtatagatgatgtacta 72
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 ccctggacaggatatcatcatatactgtaagttcgttatggtgacactacagtatagatg 71
|||||| | ||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 6 ccctgggctggatatcatcatatactgtaagttcactat-gagacactacagtatagatg 64
Query: 72 atgtact 78
|||||||
Sbjct: 65 atgtact 71
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 19 caggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgtact 78
|||||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct: 13 caggatatcatcgtatactgtaagttggctatga-gacactacagtatagatgatgtact 71
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 69.9 bits (35), Expect = 6e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 ccctggacaggatatcatcatatactgtaagttcgttatggtgacactacagtatagatg 71
|||||| |||||||||||| ||||||||||||| | || | ||||||||||||||||||
Sbjct: 6 ccctggccaggatatcatcgtatactgtaagtttgcaat-gagacactacagtatagatg 64
Query: 72 atgtact 78
|||||||
Sbjct: 65 atgtact 71
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 21 ggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgtacta 79
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatattgtaagttcacaattcagacactacagtatagatgatgtacta 73
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 21 ggatatcatcatatactgtaagttcgttatggtgacactacagtatagatgatgtact 78
|||||||||| ||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgcaatga-gacactacagtatagatgatgtact 71
