miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 113 bits (57), Expect = 3e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 gctgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggc 60
|||||||||||||||||||||||||| ||||||| || || ||||||||||||||| |||
Sbjct: 4 gctgttcctttttcctatgcatatacttctttgacatgtaactttaaagaggcataaggc 63
Query: 61 atgggaaaatggggctg 77
|||||||||||||||||
Sbjct: 64 atgggaaaatggggctg 80
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 3 tgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggcat 62
|||||||||||||||||||||||| ||||||||| | | | ||||||||||||| ||||
Sbjct: 6 tgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcat 65
Query: 63 gggaaaatggggc 75
|||||||||||||
Sbjct: 66 gggaaaatggggc 78
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 79.8 bits (40), Expect = 4e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 4 gttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggcatg 63
||||||||||||||||||||||| ||||||||| | | ||||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66
Query: 64 ggaaaatggggc 75
||||||||||||
Sbjct: 67 ggaaaatggggc 78
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 79.8 bits (40), Expect = 4e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 gctgttcctttttcctatgcatatacctctttgagatctagctttaaagaggcatagggc 60
|||||||||||||||||||||||||||||||||| | | | ||||| ||||||||||
Sbjct: 4 gctgttcctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatagggc 63
Query: 61 atgggaaaatgg 72
||||||||||||
Sbjct: 64 atgggaaaatgg 75
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 75.8 bits (38), Expect = 7e-14
Identities = 64/70 (91%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 4 gttcctttttcctatgcatatacctctttga-gatctagctttaaagaggcatagggcat 62
||||||||||||||||||||||| ||||||| ||||| || |||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaggatctggc-ctaaagaggtatagggcat 65
Query: 63 gggaaaatgg 72
||||||||||
Sbjct: 66 gggaaaatgg 75
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 4 gttcctttttcctatgcatatacctctttg-agatctagctttaaagaggcatagggcat 62
||||||||||||||||||||||| |||||| |||||| || |||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaagatctggc-ctaaagaggtatagggcat 65
Query: 63 gggaaaatggggc 75
||||||| |||||
Sbjct: 66 gggaaaacggggc 78
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 1 gctgttcctttttcctatgcatatacctctttga-gatctagctttaaagaggcataggg 59
|||||||||||||||||||||||||| ||||||| ||||| || |||||||| ||| ||
Sbjct: 4 gctgttcctttttcctatgcatatacttctttgaggatctggc-ctaaagaggtatatgg 62
Query: 60 catgggaaaatgg 72
|||||||||||||
Sbjct: 63 catgggaaaatgg 75
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 cctttttcctatgcatatacctctttgag 35
|||||||||||||||||||| ||||||||
Sbjct: 10 cctttttcctatgcatatacttctttgag 38
