miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00662;mir-132;AANH01000634.1/21971-22065 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 95
Score = 93.7 bits (47), Expect = 5e-19
Identities = 87/101 (86%), Gaps = 7/101 (6%)
Strand = Plus / Plus
Query: 8 gccagagcatcagcaccttggctttagactgcttactgctttnnnnnnnnnngtctcaca 67
||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 2 gccagagcatcagcaccttggctttagactgcttactgctt------atacagtgtcaca 55
Query: 68 gttacagtaacagtctacagtcatggctactgatgcctggc 108
| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 56 g-tacagtaacagtctacagtcatggctactgaagcctggc 95
>RF00662;mir-132;BAAF04066384.1/1751-1845 8090:Oryzias latipes
(Japanese medaka)
Length = 95
Score = 87.7 bits (44), Expect = 3e-17
Identities = 84/98 (85%), Gaps = 7/98 (7%)
Strand = Plus / Plus
Query: 11 agagcatcagcaccttggctttagactgcttactgctttnnnnnnnnnngtctcacagtt 70
|||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 5 agagcatcagcaccttggctttagactgcttactgctt------atacaatctcacag-t 57
Query: 71 acagtaacagtctacagtcatggctactgatgcctggc 108
|||||||||||||||||||||||||||||| |||||||
Sbjct: 58 acagtaacagtctacagtcatggctactgaagcctggc 95
>RF00662;mir-132;BAAF04037894.1/2420-2326 8090:Oryzias latipes
(Japanese medaka)
Length = 95
Score = 69.9 bits (35), Expect = 7e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 70 tacagtaacagtctacagtcatggctactgatgcctggc 108
||||||||||||||||||||||||||||||| |||||||
Sbjct: 57 tacagtaacagtctacagtcatggctactgacgcctggc 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 accttggctttagactgcttactgct 47
||||||||| ||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgct 41
>RF00662;mir-132;CAAK05007784.1/2841-2935 7955:Danio rerio
(zebrafish)
Length = 95
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 70 tacagtaacagtctacagtcatggctactga 100
|||||||||||||||||||||||||||||||
Sbjct: 57 tacagtaacagtctacagtcatggctactga 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 accttggctttagactgcttactgctt 48
||||||||| |||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgctt 42
>RF00662;mir-132;AAVX01172706.1/316-404 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 agtaacagtctacagtcatggctactga 100
||||||||||||||||||||||||||||
Sbjct: 54 agtaacagtctacagtcatggctactga 81
>RF00662;mir-132;ABPM01043889.1/132-226 106582:Maylandia zebra
(zebra mbuna)
Length = 95
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 70 tacagtaacagtctacagtcatggctactga 100
|||||||||||||||||| ||||||||||||
Sbjct: 57 tacagtaacagtctacagacatggctactga 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 accttggctttagactgcttactgct 47
||||||||| ||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgct 41
>RF00662;mir-132;ABRQ01002353.1/3673-3585 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 gcaccttggctttagactgcttactgc 46
||||||||||| |||||||||||||||
Sbjct: 14 gcaccttggctctagactgcttactgc 40
