miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25905_gga-mir-21:mirbase
Length = 97
Score = 81.8 bits (41), Expect = 9e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 9 ccatcctgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaaca 68
|||||||||| ||||||||||||||||| ||||||||| ||| ||| |||||| ||||||
Sbjct: 5 ccatcctgtcggatagcttatcagactgatgttgactg-ttggatctcatggcaacaaca 63
Query: 69 gtctgtaagctgtctga 85
||| ||| |||||||||
Sbjct: 64 gtcggtaggctgtctga 80
>34220_dre-mir-21-1:mirbase
Length = 148
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 15 tgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtctgt 74
|||||||||||||||||||||||||||| ||||| | || | ||||||||||||||||
Sbjct: 42 tgtcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgt 101
Query: 75 aagctgtctga 85
| |||||||||
Sbjct: 102 aggctgtctga 112
>26411_tgu-mir-21:mirbase
Length = 72
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 12 tcctgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||| ||||||||||||||||| ||||||||| ||| ||| |||||| |||||||||
Sbjct: 1 tcctgtcggatagcttatcagactgatgttgactg-ttggatctcatggcaacaacagtc 59
Query: 72 tgtaagctgtctg 84
||| ||||||||
Sbjct: 60 ggtaggctgtctg 72
>34554_fru-mir-21:mirbase
Length = 73
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 15 tgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtctgt 74
||||| |||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct: 1 tgtcaaatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgt 60
Query: 75 aagctgtctga 85
| |||||||||
Sbjct: 61 aggctgtctga 71
>34702_tni-mir-21:mirbase
Length = 122
Score = 65.9 bits (33), Expect = 5e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 13 cctgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtct 72
||||||| |||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct: 30 cctgtcaaatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtct 89
Query: 73 gtaagctgtctga 85
| | |||||||||
Sbjct: 90 gaaggctgtctga 102
>31787_mmu-mir-21:mirbase
Length = 92
Score = 58.0 bits (29), Expect = 1e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 15 tgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
|||| ||||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 11 tgtcggatagcttatcagactgatgttgactg-ttgaatctcatggcaacagcagtc 66
>31438_oan-mir-21:mirbase
Length = 114
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 9 ccatcctgtcagatagcttatcagactggtgttgactgtt 48
||||||| || ||||||||||||||||| |||||||||||
Sbjct: 16 ccatcctatcggatagcttatcagactgatgttgactgtt 55
>27341_mdo-mir-21:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 2e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 15 tgtcagatagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtctgt 74
|||| ||||||||||||||||| ||||||||| ||| ||| |||||| ||| ||||| |
Sbjct: 1 tgtcggatagcttatcagactgatgttgactg-ttggatctcatggcaacagcagtcgat 59
Query: 75 aagctgtctga 85
||||||||||
Sbjct: 60 gagctgtctga 70
>26635_cfa-mir-21:mirbase
Length = 60
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 1 tagcttatcagactgatgttgactg-ttgaatctcatggcaacagcagtc 49
>26957_eca-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacagcagtc 56
>27488_age-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacaccagtc 56
>27663_mml-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacaccagtc 56
>28180_mne-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacaccagtc 56
>28268_ggo-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacaccagtc 56
>28372_hsa-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacaccagtc 56
>30052_ppa-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacaccagtc 56
>30159_ptr-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacaccagtc 56
>30764_ppy-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacaccagtc 56
>31751_cgr-mir-21:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 18 tagcttatcagactgatgttgactg-ttgaatctcatggcaacagcagtc 66
>32671_rno-mir-21:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 18 tagcttatcagactgatgttgactg-ttgaatctcatggcaacagcagtc 66
>33141_bta-mir-21:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 8 tagcttatcagactgatgttgactg-ttgaatctcatggcaacagcagtc 56
>33923_ssc-mir-21:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 8e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttgactgtttgaatcacatggcgacaacagtc 71
||||||||||||||| ||||||||| ||||||| |||||| ||| |||||
Sbjct: 18 tagcttatcagactgatgttgactg-ttgaatctcatggcaacagcagtc 66
>34221_dre-mir-21-2:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tagcttatcagactggtgttg 42
|||||||||||||||||||||
Sbjct: 34 tagcttatcagactggtgttg 54
