miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 119 bits (60), Expect = 1e-26
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 28 tgtccgtcacgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaag 87
||||| |||| |||||||||||||||||||||||||||| || ||||| | |||||||||
Sbjct: 1 tgtccttcacaaatctttttgcggtctgggcttgctgtttatgaatattaatctgggaag 60
Query: 88 cccttaccccaaaaagcatttgtggagg 115
|||||||||||||||||||||| |||||
Sbjct: 61 cccttaccccaaaaagcatttgcggagg 88
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 113 bits (57), Expect = 7e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 37 cgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaagcccttaccc 96
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgttcataagtatctagctgggaagcccttaccc 69
Query: 97 caaaaagcatttg 109
|||||||||||||
Sbjct: 70 caaaaagcatttg 82
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 109 bits (55), Expect = 1e-23
Identities = 82/90 (91%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 28 tgtccgtcacgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaag 87
|||||||||||||||||||||||||||||||||||||| ||| || | |||||||||
Sbjct: 1 tgtccgtcacgaatctttttgcggtctgggcttgctgtgcat--tcattaatctgggaag 58
Query: 88 cccttaccccaaaaagcatttgtggaggac 117
|||||||||||||||||||| |||||||||
Sbjct: 59 cccttaccccaaaaagcattcgtggaggac 88
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio (zebrafish)
Length = 89
Score = 101 bits (51), Expect = 3e-21
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 34 tcacgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaagccctta 93
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 7 tcacgaatctttttgcggtctgggcttgctgttctcaactatca--atgggaagccctta 64
Query: 94 ccccaaaaagcatttgtggagg 115
|||||||||||||||| |||||
Sbjct: 65 ccccaaaaagcatttgcggagg 86
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 93.7 bits (47), Expect = 6e-19
Identities = 81/90 (90%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 28 tgtccgtcacgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaag 87
|||||||||||||||||||||||||||||||||||||| ||| | | | ||| |||||
Sbjct: 1 tgtccgtcacgaatctttttgcggtctgggcttgctgtgcat--acacgactct-ggaag 57
Query: 88 cccttaccccaaaaagcatttgtggaggac 117
|||||||||||||||||||| |||||||||
Sbjct: 58 cccttaccccaaaaagcattggtggaggac 87
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 37 cgaatctttttgcggtctgggcttgctgttcataaatatcagtctgggaagcccttaccc 96
||||||||||||||||||||||||||||| ||||| || | | |||||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccc 69
Query: 97 caaaaagcatt 107
|||||||||||
Sbjct: 70 caaaaagcatt 80
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 73.8 bits (37), Expect = 6e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 82 gggaagcccttaccccaaaaagcatttgtggaggact 118
|||||||||||||||||||||||||||||||||||||
Sbjct: 57 gggaagcccttaccccaaaaagcatttgtggaggact 93
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 28 tgtccgtcacgaatctttttgcggtctgggcttgctgttc 67
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtccttcacgaatctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 60.0 bits (30), Expect = 9e-09
Identities = 69/78 (88%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 28 tgtccgtcacgaatctttttgcggtctgggcttgctgtt-cataaat-atcagtctggga 85
||||| ||||| |||||||||||||||||||||||||| | ||||| | ||||| |||
Sbjct: 1 tgtccttcacggctctttttgcggtctgggcttgctgttccttaaatcaccagtc-agga 59
Query: 86 agcccttaccccaaaaag 103
||||||||||||||||||
Sbjct: 60 agcccttaccccaaaaag 77
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 38 gaatctttttgcggtctgggcttgctgttc 67
||||||||||||||||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgttc 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 83 ggaagcccttaccccaaaaagcatttg 109
||||||||||||||||||||| |||||
Sbjct: 57 ggaagcccttaccccaaaaagtatttg 83
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atctttttgcggtctgggcttgctgttc 67
||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 40 atctttttgcggtctgggcttgctgttc 67
||||||||||||||||||||||||||||
Sbjct: 78 atctttttgcggtctgggcttgctgttc 51
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atctttttgcggtctgggcttgctgttc 67
||||||||||||||||||||||||||||
Sbjct: 11 atctttttgcggtctgggcttgctgttc 38
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 atctttttgcggtctgggcttgctgttc 67
||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tctttttgcggtctgggcttgctgttc 67
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tctttttgcggtctgggcttgctgttc 67
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tctttttgcggtctgggcttgctgttc 67
|||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tctttttgcggtctgggcttgctgt 65
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 ggaagcccttaccccaaaaagcat 106
||||||||||||||||||||||||
Sbjct: 52 ggaagcccttaccccaaaaagcat 75
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 tctttttgcggtctgggcttgctgt 65
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 ggaagcccttaccccaaaaagcat 106
||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 ttttgcggtctgggcttgctgttcataa 71
|||||||||||||||||||||| |||||
Sbjct: 16 ttttgcggtctgggcttgctgtacataa 43
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 83 ggaagcccttaccccaaaaagcat 106
||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76
>RF00486;mir-129;AAWZ01021483.1/628-534 28377:Anolis carolinensis
(green anole)
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 aagcccttaccccaaaaagcat 106
||||||||||||||||||||||
Sbjct: 62 aagcccttaccccaaaaagcat 83
