miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00799;mir-354;AAGD02005008.1/3108-3217 31234:Caenorhabditis
remanei
Length = 110
Score = 119 bits (60), Expect = 7e-27
Identities = 83/88 (94%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 ctaagcaccttggtgcggctgcagacgggtatccggctcgacgttcatacatca-cgact 59
|||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 11 ctaagcgccttggtgcggctgcagacgggtaaccggctcgacgttcattcatcaccgac- 69
Query: 60 tctttccttttaccttgtttgttgctgc 87
||||||||||||||||||||||||||||
Sbjct: 70 tctttccttttaccttgtttgttgctgc 97
>RF00799;mir-354;ABEG01001653.1/28967-28849 135651:Caenorhabditis
brenneri
Length = 119
Score = 87.7 bits (44), Expect = 2e-17
Identities = 84/93 (90%), Gaps = 7/93 (7%)
Strand = Plus / Plus
Query: 2 taagcaccttggtgcggctgcagacgggtatccggctcgacgttcat-acatca----cg 56
|||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct: 12 taagcaccttggtgcggctgcagacgggtaaccggctcgacgttcatcacatcatccgcg 71
Query: 57 a-cttctttcctttta-ccttgtttgttgctgc 87
| |||||||||| ||| ||||||||||||||||
Sbjct: 72 accttctttcctattacccttgtttgttgctgc 104
>RF00799;mir-354;ABLE02026293.1/4553-4653 281687:Caenorhabditis
japonica
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ttccttttaccttgtttgttgc 84
||||||||||||||||||||||
Sbjct: 63 ttccttttaccttgtttgttgc 84
