miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39573_ppt-MIR1023a:mirbase
          Length = 170

 Score =  297 bits (150), Expect = 1e-81
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaccaccttgcagtttcatggcacactctctccatttctctaccgttcatgcagcggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  ggaccaccttgcagtttcatggcacactctctccatttctctaccgttcatgcagcggtt 70

                                                                       
Query: 61  gatcgattgggttgctggttgattgatcgatcgatggtcaggagttggaagagaattgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  gatcgattgggttgctggttgattgatcgatcgatggtcaggagttggaagagaattgga 130

                                         
Query: 121 gagagtgcattgtgaattgcggggttgacg 150
           ||||||||||||||||||||||||||||||
Sbjct: 131 gagagtgcattgtgaattgcggggttgacg 160




>39572_ppt-MIR1023a:mirbase
          Length = 170

 Score =  297 bits (150), Expect = 1e-81
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaccaccttgcagtttcatggcacactctctccatttctctaccgttcatgcagcggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  ggaccaccttgcagtttcatggcacactctctccatttctctaccgttcatgcagcggtt 70

                                                                       
Query: 61  gatcgattgggttgctggttgattgatcgatcgatggtcaggagttggaagagaattgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  gatcgattgggttgctggttgattgatcgatcgatggtcaggagttggaagagaattgga 130

                                         
Query: 121 gagagtgcattgtgaattgcggggttgacg 150
           ||||||||||||||||||||||||||||||
Sbjct: 131 gagagtgcattgtgaattgcggggttgacg 160




>39575_ppt-MIR1023b:mirbase
          Length = 172

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 98  tcaggagttgga-agagaattggagagagtgcattgtgaattgc 140
           |||||||||||  ||||||||| |||||||||||||||||||||
Sbjct: 109 tcaggagttggggagagaattgaagagagtgcattgtgaattgc 152



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 8  cttgcagtttcatggcacactctctccatttctct 42
          |||||| ||||||| ||||||||||||||||||||
Sbjct: 18 cttgcaatttcatgacacactctctccatttctct 52




>39574_ppt-MIR1023b:mirbase
          Length = 172

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 41/44 (93%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 98  tcaggagttgga-agagaattggagagagtgcattgtgaattgc 140
           |||||||||||  ||||||||| |||||||||||||||||||||
Sbjct: 109 tcaggagttggggagagaattgaagagagtgcattgtgaattgc 152



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 8  cttgcagtttcatggcacactctctccatttctct 42
          |||||| ||||||| ||||||||||||||||||||
Sbjct: 18 cttgcaatttcatgacacactctctccatttctct 52