miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01043;MIR1023;ABEU01004783.1/104781-104949 145481:Physcomitrella
patens subsp. patens
Length = 169
Score = 297 bits (150), Expect = 2e-80
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 1 ggaccaccttgcagtttcatggcacactctctccatttctctaccgttcatgcagcggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggaccaccttgcagtttcatggcacactctctccatttctctaccgttcatgcagcggtt 69
Query: 61 gatcgattgggttgctggttgattgatcgatcgatggtcaggagttggaagagaattgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gatcgattgggttgctggttgattgatcgatcgatggtcaggagttggaagagaattgga 129
Query: 121 gagagtgcattgtgaattgcggggttgacg 150
||||||||||||||||||||||||||||||
Sbjct: 130 gagagtgcattgtgaattgcggggttgacg 159
>RF01043;MIR1023;ABEU01011925.1/25350-25179 145481:Physcomitrella
patens subsp. patens
Length = 172
Score = 56.0 bits (28), Expect = 1e-07
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 98 tcaggagttgga-agagaattggagagagtgcattgtgaattgc 140
||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 109 tcaggagttggggagagaattgaagagagtgcattgtgaattgc 152
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 8 cttgcagtttcatggcacactctctccatttctct 42
|||||| ||||||| ||||||||||||||||||||
Sbjct: 18 cttgcaatttcatgacacactctctccatttctct 52
