miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 161 bits (81), Expect = 2e-39
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 9 gtacagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtg 68
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct: 9 gtacagtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtg 68
Query: 69 tttcctactttatggatgagtgtactgttggct 101
|||||||||||||||||||||||||||||||||
Sbjct: 69 tttcctactttatggatgagtgtactgttggct 101
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio (zebrafish)
Length = 107
Score = 127 bits (64), Expect = 3e-29
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 9 gtacagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtg 68
|||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct: 9 gtacagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtg 68
Query: 69 tttcctactttatggatgagtgtactgttggc 100
||||||||||||||||||||||||||||||||
Sbjct: 69 tttcctactttatggatgagtgtactgttggc 100
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 113 bits (57), Expect = 5e-25
Identities = 84/93 (90%)
Strand = Plus / Plus
Query: 11 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 70
|||||||||||| |||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 70
Query: 71 tcctactttatggatgagtgtactgttggctac 103
|||||||||||||||||||||||||| ||||||
Sbjct: 71 tcctactttatggatgagtgtactgtgggctac 103
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 109 bits (55), Expect = 7e-24
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 11 acagtgcagtcatccataaagtagaaagcactactaaacccctc-gccacagtgtagtgt 69
|||||| | |||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 11 acagtggactcatccataaagtagaaagcactactaaacgcctgtgcccaagtgtagtgt 70
Query: 70 ttcctactttatggatgagtgtactgt 96
|||||||||||||||||||||||||||
Sbjct: 71 ttcctactttatggatgagtgtactgt 97
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 97.6 bits (49), Expect = 3e-20
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 9 gtacagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtg 68
|||||||| |||| |||||||||||||||||||||||||| | | |||||||||||
Sbjct: 9 gtacagtgttgtcacccataaagtagaaagcactactaaacttcactatacagtgtagtg 68
Query: 69 tttcctactttatggatgagtgtactgttggct 101
||||||||||||||||||||| ||||||||||
Sbjct: 69 tttcctactttatggatgagtacactgttggct 101
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 93.7 bits (47), Expect = 4e-19
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 11 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 70
||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaa--ccatccaatcagtgtagtgtt 68
Query: 71 tcctactttatggatgagtgtactgt 96
|||||||||||||| ||||| |||||
Sbjct: 69 tcctactttatggacgagtgcactgt 94
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 89.7 bits (45), Expect = 7e-18
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 11 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 69
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 68
Query: 70 ttcctactttatggatgagtgtactgttggct 101
||||||||||||||||||||||||||| ||||
Sbjct: 69 ttcctactttatggatgagtgtactgtgggct 100
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 69.9 bits (35), Expect = 6e-12
Identities = 69/78 (88%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 11 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 69
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 68
Query: 70 ttcctactttatggatga 87
||||||||||||||||||
Sbjct: 69 ttcctactttatggatga 86
