miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01045;mir-544;AAWR02035089.1/26205-26101 9796:Equus caballus
(horse)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 56 gaatctgcatttttaacaagatct 79
||||||||||||||||||||||||
Sbjct: 39 gaatctgcatttttaacaagatct 16
>RF01045;mir-544;ABRN01288027.1/3085-3192 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 56 gaatctgcatttttaacaagatct 79
||||||||||||||||||||||||
Sbjct: 39 gaatctgcatttttaacaagatct 16
>RF01045;mir-544;ABRR01241125.1/2850-2955 30538:Lama pacos
(alpaca)
Length = 106
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 56 gaatctgcatttttaacaagatc 78
|||||||||||||||||||||||
Sbjct: 39 gaatctgcatttttaacaagatc 17
>RF01045;mir-544;AANU01204913.1/82976-82874 9544:Macaca mulatta
(rhesus monkey)
Length = 103
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 11 agcttgttagaaatgcagaagttttggccat 41
||||| |||||||||||||| ||||||||||
Sbjct: 87 agcttattagaaatgcagaatttttggccat 57
>RF01045;mir-544;AANU01166907.1/13714-13612 9544:Macaca mulatta
(rhesus monkey)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 aatctgcatttttaacaagatc 78
||||||||||||||||||||||
Sbjct: 38 aatctgcatttttaacaagatc 17
>RF01045;mir-544;AANU01255471.1/17206-17310 9544:Macaca mulatta
(rhesus monkey)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 11 agcttgttagaaatgcagaagttttggccatgccccagaccttctgaatc 60
||||||||||||||||| || || || || | |||||||||| |||||||
Sbjct: 89 agcttgttagaaatgcaaaatttctgcccctaccccagacctcctgaatc 40
>RF01045;mir-544;AAGU02848176.1/1134-1237 9785:Loxodonta africana
(African savanna elephant)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 11 agcttgttagaaatgcagaagttttggccatgccccagaccttctgaatc 60
|||||||||||||||||||| | |||||| | ||||||||| |||||||
Sbjct: 88 agcttgttagaaatgcagaatctctggcca-gacccagacctactgaatc 40
