miRNEST 2.0, an integrative microRNA resource :: BLAST
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 113 atttgggatcatgctatccctttggattcctcctttggtggc 154
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 57 attttggatcatgctatccctttggattcctcctttggtggc 98
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 11 gcaactggaggaggcatccaaagggatcgcattgatccc 49
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 gcaactagaggaggcatccaaagggatcgcattgatccc 39
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 113 atttgggatcatgctatccctttggattcctcctttggtggc 154
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 42 attttggatcatgctatccctttggattcctcctttggtggc 1
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 11 gcaactggaggaggcatccaaagggatcgcattgatccc 49
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 98 gcaactagaggaggcatccaaagggatcgcattgatccc 60
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 113 atttgggatcatgctatccctttggattcctcctttggtggc 154
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 58 attttggatcatgctatccctttggattcctcctttggtggc 99
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 11 gcaactggaggaggcatccaaagggatcgcattgatcccaa 51
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaactagaggaggcatccaaagggatcgcattgatcccaa 41
>48731_mtr-miR393b:pmrd
Length = 119
Score = 75.8 bits (38), Expect = 9e-15
Identities = 51/54 (94%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 89 cttaattcccttaat-tctcacaatatttgggatcatgctatccctttggattc 141
||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 64 cttaatttccttaatatctcataatatttgggatcatgctatccctttggattc 117
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 22 aggcatccaaagggatcgcattgatcccaaatct 55
||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcatccaaagggatcgcattgatcccaaatct 34
>48576_gma-miR393:pmrd
Length = 120
Score = 75.8 bits (38), Expect = 9e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 17 ggaggaggcatccaaagggatcgcattgatcccaaatc 54
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaggaggcatccaaagggatcgcattgatcccaaatc 38
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 112 tatttgggatcatgctatccctttggattcctccttt 148
||||||||||||||||||||||||||||| |||||||
Sbjct: 84 tatttgggatcatgctatccctttggatttctccttt 120
>48730_mtr-miR393:pmrd
Length = 135
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 8 actgcaactggaggaggcatccaaagggatcgcattgatcc 48
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2 actgcaacttgaggaggcatccaaagggatcgcattgatcc 42
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 115 ttgggatcatgctatccctttggattcctccttt 148
|||||||||||| ||||||||||||| |||||||
Sbjct: 93 ttgggatcatgccatccctttggatttctccttt 126
>54850_vvi-miR393b:pmrd
Length = 83
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 17 ggaggaggcatccaaagggatcgcattgatcccaaa 52
||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaggaggcatccaaagggatcgcattgatcccaaa 36
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 118 ggatcatgctatccctttggattcctcctttgg 150
|||||||||||||||||||||||||||||||||
Sbjct: 51 ggatcatgctatccctttggattcctcctttgg 83
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 54 attttggatcatgctatccctttggattcctcctttggt 92
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 18 gaggaggcatccaaagggatcgcattgatccc 49
||||||||||||||||||||||||||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatccc 36
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 55 attttggatcatgctatccctttggattcctcctttggt 93
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 18 gaggaggcatccaaagggatcgcattgatcccaa 51
||||||||||||||||||||||||||||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcccaa 38
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 55 attttggatcatgctatccctttggattcctcctttggt 93
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 18 gaggaggcatccaaagggatcgcattgatcccaa 51
||||||||||||||||||||||||||||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatcccaa 38
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 113 atttgggatcatgctatccctttggattcctcctttggt 151
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 54 attttggatcatgctatccctttggattcctcctttggt 92
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 18 gaggaggcatccaaagggatcgcattgatccc 49
||||||||||||||||||||||||||||||||
Sbjct: 5 gaggaggcatccaaagggatcgcattgatccc 36
>51720_ptc-miR393a:pmrd
Length = 85
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 18 gaggaggcatccaaagggatcgcattgatcccaa 51
||||||||||||||||||||||||||||||||||
Sbjct: 2 gaggaggcatccaaagggatcgcattgatcccaa 35
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 113 atttgggatcatgctatccctttggattcctcct 146
|||| |||||||||||||||||||||||||||||
Sbjct: 52 attttggatcatgctatccctttggattcctcct 85
>51721_ptc-miR393b:pmrd
Length = 84
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 18 gaggaggcatccaaagggatcgcattgatccc 49
||||||||||||||||||||||||||||||||
Sbjct: 2 gaggaggcatccaaagggatcgcattgatccc 33
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 113 atttgggatcatgctatccctttggattcctcct 146
|||| |||||||||||||||||||||||||||||
Sbjct: 51 attttggatcatgctatccctttggattcctcct 84
>54470_sbi-miR393:pmrd
Length = 139
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 15 ctggaggaggcatccaaagggatcgcattgatcc 48
|||||||| |||||||||||||||||||||||||
Sbjct: 9 ctggaggaagcatccaaagggatcgcattgatcc 42
>48917_osa-miR393:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 gcatccaaagggatcgcattgatcc 48
|||||||||||||||||||||||||
Sbjct: 8 gcatccaaagggatcgcattgatcc 32
>54849_vvi-miR393a:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatccca 50
||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 atccaaagggatcgcattgatcc 48
|||||||||||||||||||||||
Sbjct: 11 atccaaagggatcgcattgatcc 33
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 atccaaagggatcgcattgatcc 48
|||||||||||||||||||||||
Sbjct: 9 atccaaagggatcgcattgatcc 31
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 118 ggatcatgctatccctttggattcctcctt 147
||||||||||||| |||||||||| |||||
Sbjct: 102 ggatcatgctatctctttggattcatcctt 131
>46999_ath-miR393b:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 atccaaagggatcgcattgatcc 48
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>46998_ath-miR393a:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 atccaaagggatcgcattgatcc 48
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 118 ggatcatgctatccctttggattcctcctt 147
||||||||||||| |||||||||| |||||
Sbjct: 103 ggatcatgctatctctttggattcatcctt 132
>55062_zma-miR393f:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatcc 48
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55057_zma-miR393a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatcc 48
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>48373_bna-miR393:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatcc 48
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55063_zma-miR393g:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55061_zma-miR393e:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67
>55060_zma-miR393d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69
>55059_zma-miR393c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55058_zma-miR393b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55056_zma-miR393:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>51723_ptc-miR393d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51722_ptc-miR393c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48919_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48918_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48501_ghr-miR393:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 tccaaagggatcgcattgatc 47
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
