miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 1 tcacggcgcagtagctggttgaaggggaccaaacctcacagaaacacctgacttggttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tcacggcgcagtagctggttgaaggggaccaaacctcacagaaacacctgacttggttcc 26
Query: 61 gtttgaccagccacggcaaggcg 83
|||||||||||||||||||||||
Sbjct: 25 gtttgaccagccacggcaaggcg 3
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Minus
Query: 1 tcacggcgcagtagctggttgaaggggaccaaacctcacagaaacacctgacttggttcc 60
||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 85 tcacgacgcagtagctggttgaaggggaccaaacctctctgaaacacctgacttggttcc 26
Query: 61 gtttgaccagccacggcaaggcg 83
|||||||||||||| ||||||||
Sbjct: 25 gtttgaccagccacagcaaggcg 3
>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
(zebrafish)
Length = 85
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 1 tcacggcgcagtagctggttgaaggggaccaaacctcacagaaacacctgacttggttcc 60
||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||
Sbjct: 83 tcacggcgcagtagctggttgaaagggaccaaacctctcgcaaacacccgacttggttcc 24
Query: 61 gtttgaccagc 71
|||| ||||||
Sbjct: 23 gttttaccagc 13
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 77.8 bits (39), Expect = 2e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 11 gtagctggttgaaggggaccaaacctcacagaaacacctgacttggttccgtttgaccag 70
||||||||||||||||||||||||||| ||| || | | |||||||||||||||||||||
Sbjct: 74 gtagctggttgaaggggaccaaacctctcaggaaga-cggacttggttccgtttgaccag 16
Query: 71 cca 73
|||
Sbjct: 15 cca 13
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 12 tagctggttgaaggggaccaaacctc 37
||||||||||||||||||||||||||
Sbjct: 73 tagctggttgaaggggaccaaacctc 48
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 11 gtagctggttgaaggggaccaaacc 35
|||||||||||||||||||||||||
Sbjct: 69 gtagctggttgaaggggaccaaacc 45
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 8 gcagtagctggttgaaggggaccaaacc 35
|||| |||||||||||||||||||||||
Sbjct: 81 gcagcagctggttgaaggggaccaaacc 54
>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gtagctggttgaaggggaccaaacct 36
|||||||||| |||||||||||||||
Sbjct: 74 gtagctggttaaaggggaccaaacct 49
