miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 79.8 bits (40), Expect = 1e-14
Identities = 52/55 (94%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgcattcaaa--gagttcctttgcat 72
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatccaaattgagttcctttgcat 55
Score = 71.9 bits (36), Expect = 3e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 105 ttgttttgcagttcaataaagctgtgggaagatacagata 144
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 67 ttgttttgcggttcaataaagctgtgggaagatacagata 106
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgcatt 54
|||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatt 35
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 110 ttgcagttcaataaagctgtgggaagatac 139
|||| |||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagatac 114
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 108 ttttgcagttcaataaagctgtgggaagatac 139
|||||| |||||||||||||||||||||||||
Sbjct: 130 ttttgcggttcaataaagctgtgggaagatac 161
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 108 ttttgcagttcaataaagctgtgggaagatacagata 144
|||||| |||||||||||||||||||||||| |||||
Sbjct: 64 ttttgcggttcaataaagctgtgggaagatatagata 100
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 21 tttgtattcttccacagctttcttgaactgcat 53
|||||||||||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 110 ttgcagttcaataaagctgtgggaagatacag 141
|||| |||||||||||||||||||||||||||
Sbjct: 67 ttgcggttcaataaagctgtgggaagatacag 98
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 gttcaataaagctgtgggaagataca 140
||||||||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaagataca 131
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 tgtattcttccacagctttcttgaactgca 52
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 109 tttgcagttcaataaagctgtgggaagatacaga 142
||||| ||||||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacaga 150
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus
trichocarpa
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 24 gtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 110 ttgcagttcaataaagctgtgggaagataca 140
|||| ||||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagataca 122
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtgggaa 134
|||||||||||||||||||||||
Sbjct: 87 gcagttcaataaagctgtgggaa 109
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 tgcagttcaataaagctgtgggaa 134
||||||||||||||||||||||||
Sbjct: 77 tgcagttcaataaagctgtgggaa 100
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtgggaa 134
|||||||||||||||||||||||
Sbjct: 75 gcagttcaataaagctgtgggaa 97
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 tgcagttcaataaagctgtgggaa 134
||||||||||||||||||||||||
Sbjct: 84 tgcagttcaataaagctgtgggaa 107
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gcagttcaataaagctgtgggaa 134
|||||||||||||||||||||||
Sbjct: 123 gcagttcaataaagctgtgggaa 145
>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
(papaya)
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactg 50
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactg 50
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactg 50
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
