miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 115 bits (58), Expect = 9e-26
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 3 gccccggacaggatatcatcttatactngtagtttattaaagagacactacagtatagat 62
|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 5 gccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatagat 64
Query: 63 gatgtactatccagggt 79
|||||||||||||||||
Sbjct: 65 gatgtactatccagggt 81
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 85.7 bits (43), Expect = 8e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 9 gacaggatatcatcttatactngtagtttattaaagagacactacagtatagatgatgta 68
|||||||||||||| |||||| |||| |||| |||||||||||||||||||||||||
Sbjct: 11 gacaggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgta 70
Query: 69 ctatccaggg 78
||||||||||
Sbjct: 71 ctatccaggg 80
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gagacactacagtatagatgatgtacta 71
||||||||||||||||||||||||||||
Sbjct: 45 gagacactacagtatagatgatgtacta 72
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 gagacactacagtatagatgatgtact 70
|||||||||||||||||||||||||||
Sbjct: 45 gagacactacagtatagatgatgtact 71
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 gagacactacagtatagatgatgtact 70
|||||||||||||||||||||||||||
Sbjct: 45 gagacactacagtatagatgatgtact 71
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 gagacactacagtatagatgatgtact 70
|||||||||||||||||||||||||||
Sbjct: 45 gagacactacagtatagatgatgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 gagacactacagtatagatgatgtact 70
|||||||||||||||||||||||||||
Sbjct: 45 gagacactacagtatagatgatgtact 71
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 agacactacagtatagatgatgtacta 71
|||||||||||||||||||||||||||
Sbjct: 47 agacactacagtatagatgatgtacta 73
