miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 157 bits (79), Expect = 3e-38
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 74
Query: 76 tggttaggctgggcagggacaca 98
|||||||||||||| ||||||||
Sbjct: 75 tggttaggctgggctgggacaca 97
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 125 bits (63), Expect = 1e-28
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 75
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcacat 75
Query: 76 tggttaggctgggcaggga 94
|||||||||| ||| ||||
Sbjct: 76 tggttaggctaggctggga 94
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 123 bits (62), Expect = 4e-28
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 75
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacat 75
Query: 76 tggttaggctgggcagggacac 97
|||||||||||||| |||||||
Sbjct: 76 tggttaggctgggctgggacac 97
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 75
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacat 75
Query: 76 tggttaggctgggcagggacaca 98
|||||| |||||| ||||||||
Sbjct: 76 tggttaagctgggttgggacaca 98
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 75
|||||||||||||||||||||||||||| || ||| || ||||||||||||| ||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcctccagctacaactgaacagtagtctgcacat 75
Query: 76 tggttaggct 85
||||||||||
Sbjct: 76 tggttaggct 85
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 80
||||||||||||||||||||||||| || | | | || ||||||||| |||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattatcatactggtgtacagtagtctgcacattggtt 80
Query: 81 aggctgggcagggac 95
|| ||||||| ||||
Sbjct: 81 agactgggcatggac 95
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 75
||||||||||||||||||||||||||||| | | | | || ||||||||| ||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacat 75
Query: 76 tggttaggctgg 87
||||||||||||
Sbjct: 76 tggttaggctgg 87
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 75
||||||||||||||||||||||||||||| | | | | || ||||||||| ||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacat 74
Query: 76 tggttaggctgg 87
||||||||||||
Sbjct: 75 tggttaggctgg 86
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacat 75
||||||||||||||||||||||||||||| | | | | || ||||||||| ||||||
Sbjct: 16 gcctgcccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacat 75
Query: 76 tggttaggctgg 87
||||||||||||
Sbjct: 76 tggttaggctgg 87
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 80
||||||||||||||||||||||||| | | | | || ||||||||| |||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 81 aggctgggcagggac 95
|| ||||||| ||||
Sbjct: 81 agactgggcacggac 95
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctgcagc-tgaacagtagtccgcacattggt 79
|||||||||||||||||||||||| | |||| | || ||||||||| ||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctgggacatgtacagtagtctgcacattggt 80
Query: 80 taggctgggc 89
||||||||||
Sbjct: 81 taggctgggc 90
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 80
|||||||||||||||||||||||| | ||| | || ||||||||| |||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 80
Query: 81 aggctgggca 90
|| |||||||
Sbjct: 81 agactgggca 90
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/72 (86%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 20 gcccagtgttcagactacctgttcatca--tgctgcagctgaacagtagtccgcacattg 77
||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||
Sbjct: 20 gcccagtgttcagactacctgttcaggggctgctgcacgcgtacagtagtctgcacattg 79
Query: 78 gttaggctgggc 89
||||||||||||
Sbjct: 80 gttaggctgggc 91
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/76 (85%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttcatcatgctgc--agctgaacagtagtccgcac 73
|||| |||||||||||||||||||||||| | ||| | || || ||||||||| ||||
Sbjct: 16 gccttcccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcac 75
Query: 74 attggttaggctgggc 89
||||||||| ||||||
Sbjct: 76 attggttagactgggc 91
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 16 gcctgcccagtgttcagactacctgttca 44
|||||||||||||||||||||||||||||
Sbjct: 15 gcctgcccagtgttcagactacctgttca 43
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctgg 87
||||||||| ||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgg 86
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 80
||||||||||||||||||||||||| | | | | || ||||||||| |||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 81 aggctgggc 89
|| ||||||
Sbjct: 81 agactgggc 89
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctg-cagc-tgaacagtagtccgcacattgg 78
|||||||||||||||||||||||| | ||| || | || ||||||||| |||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcacattgg 80
Query: 79 ttaggctgggc 89
|||||||||||
Sbjct: 81 ttaggctgggc 91
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 63/73 (86%), Gaps = 4/73 (5%)
Strand = Plus / Plus
Query: 20 gcccagtgttcagactacctgttcat---catgctgcagctgaacagtagtccgcacatt 76
||||||||||||||||||||||||| | | ||||| || ||||||||| |||||||
Sbjct: 20 gcccagtgttcagactacctgttcaggcgcct-ctgcatgtgtacagtagtctgcacatt 78
Query: 77 ggttaggctgggc 89
|||||||||||||
Sbjct: 79 ggttaggctgggc 91
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 ctgcccagtgttcagactacctgttca 44
|||||||||||||||||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttca 43
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctg 86
||||||||| |||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctg 85
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 80
|||||||||||||||||||||||| || | | | || ||||||||| |||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggatcatactggtgtacagtagtctgcacattggtt 80
Query: 81 aggctgggcagggac 95
|| ||| ||| ||||
Sbjct: 81 agactgtgcatggac 95
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctgggc 89
||||||||| ||||||||||||||||||||
Sbjct: 62 acagtagtctgcacattggttaggctgggc 91
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctgggc 89
||||||||| ||||||||||||||||||||
Sbjct: 62 acagtagtctgcacattggttaggctgggc 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcccagtgttcagactacctgttca 44
|||||||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttca 44
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctgggc 89
||||||||| ||||||||||||||||||||
Sbjct: 61 acagtagtctgcacattggttaggctgggc 90
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctgggc 89
||||||||| ||||||||||||||||||||
Sbjct: 57 acagtagtcagcacattggttaggctgggc 86
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctgggc 89
||||||||| ||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgggc 88
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctgggc 89
||||||||| ||||||||||||||||||||
Sbjct: 59 acagtagtctgcacattggttaggctgggc 88
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 80
|||||||||||||||||||||||| || | | | || ||||||||| |||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 80
Query: 81 ag 82
||
Sbjct: 81 ag 82
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 80
|||||||||||||||||||||||| || | | | || ||||||||| |||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagaatcttcctggtgtacagtagtctgcacattggtt 80
Query: 81 ag 82
||
Sbjct: 81 ag 82
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcccagtgttcagactacctgttca 44
|||||||||||||||||||||||||
Sbjct: 20 gcccagtgttcagactacctgttca 44
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttca 44
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttca 44
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 cccagtgttcagactacctgttca 44
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 acagtagtccgcacattggttaggctg 86
||||||||| |||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggctg 86
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gcccagtgttcagactacctgtt 42
|||||||||||||||||||||||
Sbjct: 19 gcccagtgttcagactacctgtt 41
