miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00694;mir-137;CAAK05033301.1/18518-18419 7955:Danio rerio
(zebrafish)
Length = 100
Score = 186 bits (94), Expect = 4e-47
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 tttctaaggctctcttcggtgacgggtattcttgggtggataatacggctctcgttgtta 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttctgaggctctcttcggtgacgggtattcttgggtggataatacggctctcgttgtta 60
Query: 61 ttgcttaagaatacgcgtagttgaggagagtcattgtc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgcttaagaatacgcgtagttgaggagagtcattgtc 98
>RF00694;mir-137;AL929343.7/129004-128905 7955:Danio rerio
(zebrafish)
Length = 100
Score = 161 bits (81), Expect = 2e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 10 ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 69
Query: 70 aatacgcgtagttgaggagagtcat 94
|||||||||||| ||||||||||||
Sbjct: 70 aatacgcgtagtcgaggagagtcat 94
>RF00694;mir-137;BAAE01237923.1/971-872 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 149 bits (75), Expect = 8e-36
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 10 ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 69
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 10 ctctcttcggtgacgggtattcttgggtggataatacggatcacgttgttattgcttaag 69
Query: 70 aatacgcgtagttgaggagagtc 92
|||||||||||||||||||||||
Sbjct: 70 aatacgcgtagttgaggagagtc 92
>RF00694;mir-137;AADN02012896.1/32588-32489 9031:Gallus gallus
(chicken)
Length = 100
Score = 131 bits (66), Expect = 2e-30
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 10 ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 69
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 10 ctctcttcggtgacgggtattcttgggtggataatacggattacgttgttattgcttaag 69
Query: 70 aatacgcgtagttgaggagagt 91
|||||||||||| |||||||||
Sbjct: 70 aatacgcgtagtcgaggagagt 91
>RF00694;mir-137;ABRO01064648.1/7203-7302 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 107 bits (54), Expect = 3e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 10 ctctcttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaag 69
|||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct: 10 ctctattcggtgacgggtattcttgggtggataatacggattacgttgttatagcttaag 69
Query: 70 aatacgcgtagttgaggagagt 91
|||||| ||||| |||||||||
Sbjct: 70 aatacgtgtagtcgaggagagt 91
>RF00694;mir-137;AAWZ01010620.1/48359-48459 28377:Anolis
carolinensis (green anole)
Length = 101
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| ||||||| | | |||||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggtatataatacagatggcgttgttattgcttgagaatacgcgtagt 81
Query: 82 tgagg 86
|||||
Sbjct: 82 tgagg 86
>RF00694;mir-137;AAPN01296459.1/4449-4348 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 15 ttcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaagaatac 74
|||| |||||||||||||||||| ||||||||| | || ||||||||||| |||||||
Sbjct: 15 ttcgatgacgggtattcttgggtacataatacggatggcgctgttattgcttgagaatac 74
Query: 75 gcgtagttgagg 86
||||||| ||||
Sbjct: 75 gcgtagtcgagg 86
>RF00694;mir-137;AJ324266.1/117-18 9606:Homo sapiens (human)
Length = 100
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 16 tcggtgacgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacg 75
||||||||||||||||||||||||||||| ||| | ||||||||| | |||||||||||
Sbjct: 16 tcggtgacgggtattcttgggtggataatccggatgacgttgttatggtttaagaatacg 75
>RF00694;mir-137;BAAF04063265.1/5995-5897 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| |||||||| | | ||| ||||||||||| |||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatgtcgatgttattgcttgagaatacgcgtagc 81
Query: 82 tgag 85
||||
Sbjct: 82 tgag 85
>RF00694;mir-137;CAAE01013623.1/560-657 99883:Tetraodon
nigroviridis
Length = 98
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| |||||||| | | | | ||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgtagt 81
>RF00694;mir-137;ABPK01025702.1/584-484 57307:Labeotropheus
fuelleborni
Length = 101
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| |||||||| | | | | ||||||||||| ||||||||||||||
Sbjct: 23 acgggtattcttgggttgataatacagatgtggatgttattgcttgagaatacgcgtagt 82
>RF00694;mir-137;BAAF04031315.1/5933-5836 8090:Oryzias latipes
(Japanese medaka)
Length = 98
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 22 acgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtagt 81
|||||||||||||||| |||||||| | | | | ||||||||||| ||||||||||||||
Sbjct: 22 acgggtattcttgggttgataatacagatatggatgttattgcttgagaatacgcgtagt 81
>RF00694;mir-137;ABVD01008873.1/1869-1971 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 103
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 10 ctctcttcggtgacgggtattcttgggtggataatacgg 48
|||||||| ||||||| ||||||||||||||||||||||
Sbjct: 10 ctctcttcagtgacggatattcttgggtggataatacgg 48
>RF00694;mir-137;AAFR03049204.1/9121-9021 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 20 tgacgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgta 79
|||||||||||||||||| |||||||| | || ||||||||||| ||||||| ||||
Sbjct: 20 tgacgggtattcttgggtagataataccaatggcgctgttattgcttgagaatacacgta 79
Query: 80 gttgagg 86
|| ||||
Sbjct: 80 gtcgagg 86
>RF00694;mir-137;AAGE02029705.1/92443-92543 7159:Aedes aegypti
(yellow fever mosquito)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 gttgttattgcttaagaatacgcgtagttga 84
||||||||||||| ||||||| |||||||||
Sbjct: 56 gttgttattgcttgagaatacacgtagttga 86
>RF00694;mir-137;ABKQ02013341.1/3039-2937 377270:Anopheles gambiae
S
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 gttgttattgcttaagaatacgcgtagttga 84
||||||||||||| ||||||| |||||||||
Sbjct: 56 gttgttattgcttgagaatacacgtagttga 86
