miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 67.9 bits (34), Expect = 8e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 247 tggttccatcaggtcatctagcagcttcaatcactcac 284
||||||||||||||||||| ||||||||||||||||||
Sbjct: 396 tggttccatcaggtcatcttgcagcttcaatcactcac 433
Score = 61.9 bits (31), Expect = 5e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 31 tttgagaggttaaagctgccagcatgatctggtaa 65
||||||||||| |||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 67.9 bits (34), Expect = 8e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 242 agttttggttccatcaggtcatctagcagcttcaatcactca 283
|||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 109 agttgtggttccatcaggtcatcttgcagcttcaatcactca 150
Score = 61.9 bits (31), Expect = 5e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 31 tttgagaggttaaagctgccagcatgatctggtaa 65
||||||||||| |||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 247 tggttccatcaggtcatctagcagcttcaatcactca 283
||||||||||||||||||| |||||||||||||||||
Sbjct: 395 tggttccatcaggtcatcttgcagcttcaatcactca 431
Score = 61.9 bits (31), Expect = 5e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 31 tttgagaggttaaagctgccagcatgatctggtaa 65
||||||||||| |||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 58.0 bits (29), Expect = 8e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 31 tttgagaggttaaagctgccagcatgatctggt 63
||||||||||| |||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggt 36
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 254 atcaggtcatctagcagcttcaatcactcac 284
|||||||||||| ||||||||||||||||||
Sbjct: 321 atcaggtcatcttgcagcttcaatcactcac 351
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 31 tttgagaggttaaagctgccagcatgatctggtaa 65
|||||||| || |||||||||||||||||||||||
Sbjct: 4 tttgagagattgaagctgccagcatgatctggtaa 38
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 249 gttccatcaggtcatctagcagcttcaatcactca 283
||||||||||||||||| |||||||||||| ||||
Sbjct: 305 gttccatcaggtcatcttgcagcttcaatccctca 339
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 33 tgagaggttaaagctgccagcatgatctggt 63
||||||||| |||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 33 tgagaggttaaagctgccagcatgatctg 61
||||||||| |||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 aagctgccagcatgatctggtaa 65
|||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 aagctgccagcatgatctggtaa 65
|||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 aagctgccagcatgatctggtaa 65
|||||||||||||||||||||||
Sbjct: 16 aagctgccagcatgatctggtaa 38
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 33 tgagaggttaaagctgccagcatgatctggt 63
||||||| | |||||||||||||||||||||
Sbjct: 6 tgagaggctgaagctgccagcatgatctggt 36
