miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 5 gccaatgcagcatcatcaagattctca 31
|||||||||||||||||||||||||||
Sbjct: 155 gccaatgcagcatcatcaagattctca 129
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 3 ttgccaatgcagcatcatcaagattctcat 32
||||| ||||||||||||||||||||||||
Sbjct: 112 ttgccgatgcagcatcatcaagattctcat 83
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 3 ttgccaatgcagcatcatcaagattctcat 32
||||| ||||||||||||||||||||||||
Sbjct: 108 ttgccgatgcagcatcatcaagattctcat 79
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccaatgcagcatcatcaagattctca 31
||||| |||||||||||||||||||||||
Sbjct: 137 ttgccgatgcagcatcatcaagattctca 109
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccaatgcagcatcatcaagattctca 31
||||| |||||||||||||||||||||||
Sbjct: 158 ttgccgatgcagcatcatcaagattctca 130
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccaatgcagcatcatcaagattctca 31
||||| |||||||||||||||||||||||
Sbjct: 117 ttgccgatgcagcatcatcaagattctca 89
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccaatgcagcatcatcaagattctca 31
||||| |||||||||||||||||||||||
Sbjct: 116 ttgccgatgcagcatcatcaagattctca 88
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 aatgcagcatcatcaagattctcat 32
|||||||||||||||||||||||||
Sbjct: 102 aatgcagcatcatcaagattctcat 78
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcatg 33
|||||||||||||||||||||||||
Sbjct: 101 atgcagcatcatcaagattctcatg 77
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 163 atgcagcatcatcaagattctcat 140
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 105 atgcagcatcatcaagattctcat 82
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 73 tttctatgtgaatcttgatggtgctgc 99
|||| ||||||||||||||||||||||
Sbjct: 39 tttccatgtgaatcttgatggtgctgc 13
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana
(thale cress)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 99 atgcagcatcatcaagattctcat 76
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 atttgccaatgcagcatcatcaagattc 28
||||||| ||||||||||||||||||||
Sbjct: 132 atttgccgatgcagcatcatcaagattc 105
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 atttgccaatgcagcatcatcaagattc 28
||||||| ||||||||||||||||||||
Sbjct: 181 atttgccgatgcagcatcatcaagattc 154
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 133 atgcagcatcatcaagattctcat 110
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 158 atgcagcatcatcaagattctcat 135
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 78 atgtgaatcttgatggtgctgcac 101
||||||||||||||||||||||||
Sbjct: 34 atgtgaatcttgatggtgctgcac 11
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 138 atgcagcatcatcaagattctcat 115
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 78 atgtgaatcttgatggtgctgcac 101
||||||||||||||||||||||||
Sbjct: 34 atgtgaatcttgatggtgctgcac 11
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 129 atgcagcatcatcaagattctcat 106
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 112 atgcagcatcatcaagattctcat 89
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 78 atgtgaatcttgatggtgctgcac 101
||||||||||||||||||||||||
Sbjct: 34 atgtgaatcttgatggtgctgcac 11
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctcat 32
||||||||||||||||||||||||
Sbjct: 102 atgcagcatcatcaagattctcat 79
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 203 atgcagcatcatcaagattctca 181
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattctcat 32
|||||||||||||||||||||||
Sbjct: 112 tgcagcatcatcaagattctcat 90
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 120 atgcagcatcatcaagattctca 98
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 119 atgcagcatcatcaagattctca 97
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 149 atgcagcatcatcaagattctca 127
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 150 atgcagcatcatcaagattctca 128
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 79 tgtgaatcttgatggtgctgcac 101
|||||||||||||||||||||||
Sbjct: 33 tgtgaatcttgatggtgctgcac 11
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 80 atgcagcatcatcaagattctca 58
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 ccaatgcagcatcatcaagattc 28
|||||||||||||||||||||||
Sbjct: 148 ccaatgcagcatcatcaagattc 126
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 ccaatgcagcatcatcaagattc 28
|||||||||||||||||||||||
Sbjct: 146 ccaatgcagcatcatcaagattc 124
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 ccaatgcagcatcatcaagattc 28
|||||||||||||||||||||||
Sbjct: 183 ccaatgcagcatcatcaagattc 161
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa
Japonica Group
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 atgcagcatcatcaagattctca 31
|||||||||||||||||||||||
Sbjct: 99 atgcagcatcatcaagattctca 77
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattctca 31
||||||||||||||||||||||
Sbjct: 102 tgcagcatcatcaagattctca 81
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattctca 31
||||||||||||||||||||||
Sbjct: 121 tgcagcatcatcaagattctca 100
