miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;DQ908352.1/346-226 3635:Gossypium hirsutum (upland
cotton)
Length = 121
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 27 cttacagagttcattggcattctgtccacctcc 59
||||||||||| |||||||||||||||||||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcc 33
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 27 cttacagagttcattggcattctgtccacctcc 59
||||||||||| |||||||||||||||||||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcc 33
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 27 cttacagagttcattggcattctgtccacctcc 59
|||||||||||| ||||||||||||||||||||
Sbjct: 1 cttacagagttctttggcattctgtccacctcc 33
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 105 ggaggtgggcatactgccaatagag 129
|||||||||||||||||||||||||
Sbjct: 87 ggaggtgggcatactgccaatagag 111
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus
trichocarpa
Length = 99
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 27 cttacagagttcattggcattctgtccacctcc 59
||||||||||| |||||||||||||||||||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcc 33
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 tggaggtgggcatactgccaatagagctgtgttgg 138
||||||||||||||||||||| ||||| ||||||
Sbjct: 65 tggaggtgggcatactgccaaccgagctctgttgg 99
>RF00688;MIR394;ABXC01002939.1/43674-43574 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 104 tggaggtgggcatactgccaatagagctgtgt 135
|||||||||||||||||||||| |||||||||
Sbjct: 67 tggaggtgggcatactgccaatggagctgtgt 98
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 agttcattggcattctgtccacctcc 59
||||| ||||||||||||||||||||
Sbjct: 10 agttccttggcattctgtccacctcc 35
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 104 tggaggtgggcatactgccaatagagctgtgt 135
|||||||||||||||||||||| |||||||||
Sbjct: 78 tggaggtgggcatactgccaatggagctgtgt 109
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 agagttcattggcattctgtccacctcc 59
||||||| ||||||||||||||||||||
Sbjct: 8 agagttctttggcattctgtccacctcc 35
>RF00688;MIR394;AM428484.2/52366-52463 29760:Vitis vinifera
Length = 98
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 30 acagagttcattggcattctgtccacctccc 60
|||||||| ||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctccc 34
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tgtggaggtgggcatactgccaa 124
|||||||||||||||||||||||
Sbjct: 62 tgtggaggtgggcatactgccaa 84
>RF00688;MIR394;EU947221.1/92-210 4577:Zea mays
Length = 119
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 104 tggaggtgggcatactgccaatagagctgtg 134
|||||||||||||||||||||| ||||||||
Sbjct: 85 tggaggtgggcatactgccaatggagctgtg 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 agagttcattggcattctgtccacctcc 59
||||||| ||||||||||||||||||||
Sbjct: 9 agagttccttggcattctgtccacctcc 36
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 27 cttacagagttcattggcattctgtccacctccc 60
||||||||| || |||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctccc 34
>RF00688;MIR394;BT066604.1/356-467 4577:Zea mays
Length = 112
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 32 agagttcattggcattctgtccacctccct 61
||||||| ||||||||||||||||||||||
Sbjct: 8 agagttccttggcattctgtccacctccct 37
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 104 tggaggtgggcatactgccaatagagctg 132
|||||||||||||||||||||| ||||||
Sbjct: 78 tggaggtgggcatactgccaatggagctg 106
>RF00688;MIR394;AC009978.3/24986-25106 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 27 cttacagagttcattggcattctgtccacctcc 59
||||||||| || ||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcc 33
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 105 ggaggtgggcatactgccaatagag 129
|||||||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaatagag 112
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 27 cttacagagttcattggcattctgtccacctcc 59
||||||||||| ||||||||||||||||||||
Sbjct: 1 cttacagagttttttggcattctgtccacctcc 33
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 tggaggtgggcatactgccaatagagctgtgttgg 138
||||||||||||||||||||| ||||| ||||||
Sbjct: 65 tggaggtgggcatactgccaactgagctctgttgg 99
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 27 cttacagagttcattggcattctgtccacctcc 59
||||||||| | |||||||||||||||||||||
Sbjct: 1 cttacagagcttattggcattctgtccacctcc 33
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 tggaggtgggcatactgccaatagagctgtgttgg 138
||||||||||||||||||||| ||||| ||||||
Sbjct: 99 tggaggtgggcatactgccaactgagctctgttgg 133
>RF00688;MIR394;ABXC01001499.1/165004-165103 4558:Sorghum bicolor
(sorghum)
Length = 100
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 agagttcattggcattctgtccacctcc 59
||||||| ||||||||||||||||||||
Sbjct: 8 agagttccttggcattctgtccacctcc 35
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 104 tggaggtgggcatactgccaatagagctgtgt 135
||||||||| |||||||||||| |||||||||
Sbjct: 66 tggaggtggacatactgccaatggagctgtgt 97
